Published October 2, 2023 | Version v1
Journal article Open

G-quadruplex-mediated genomic instability drives SNVs in cancer

Authors/Creators

  • 1. Rudolf Virchow Center for Integrative and Translational Bioimaging

Description

This repository contains the supplementary Python and Bash Code used in the manuscript G-quadruplex-mediated genomic instability drives SNVs in cancer by Richl et al.

Python Scripts

  1. MYC_CDK4.py
  2. Cancer_Gene_Density.py
  3. Cancer_Type_Standard_Deviation.py
  4. Cancer_Types_Sunburst.py
  5. Coxs_Proportional_Hazards_Model.py
  6. Gathering_Data.py
  7. Incomplete_Categorical_Bootstrapping.py
  8. Libraries.py
  9. Normalizing_GC_Content.py
  10. Plot_Coxs_Proportional_Hazards_Model.py
  11. Plot_Incomplete_Categorical_Bootstrapping.py
  12. Spatial_Distribution.py
  13. Stratifying_Window_Analysis.py
  14. Window_Analysis.py
  15. cSNP_dbSNP_Cancer_Gene_Density.py
  16. cSNVs_Different_Cancer_Types.py

Shell Scripts

  1. Process_GDC_Data.sh
  2. GDC_Download.sh
  3. Local_Density_cSNVs.sh
  4. Local_density_MYC_CDK4.sh

Files

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