Published July 5, 2023
| Version v0.2
Dataset
Open
Hierarchical assemblies ssRNA
- 1. Department of Theoretical Biophysics, Max Planck Institute of Biophysics
- 2. Faculty of Biology, Johannes Gutenberg University Mainz
Description
Models of single-stranded RNA with atomic detail generated with the hierarchical chain growth; RNA fragment MD library the polymers were grown from.
Notes
The data uploaded here may be updated.
*HCG_models.tar.gz*: homopolymeric rA30 and rU30, rA19 with attached FRET fluorophores Alexa 594 and Alexa 488, heteropolymeric rUCAAUC, and 5' UTR of SARS-CoV-2. For each model we uploaded a multiframe PDB with 20 models.
*fragmentLib_RNA.tar.gz*: 100 ns REMD trajectories of 64 fragments used as input for HCG (or alternative fragment assembly implementations).
Files
Files
(524.1 MB)
| Name | Size | Download all |
|---|---|---|
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md5:4a3797b0c30aa763d42425cc96bbb0eb
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521.0 MB | Download |
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md5:02c6ceb1c19de9cf99620423615ae83a
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3.1 MB | Download |