Demo data for mAFiA

Models and demo data for https://github.com/dieterich-lab/mAFiA

The folder "models" contains:

• backbone.torch: RODAN-based neural network for basecalling and feature extraction
• backbone.config: training configuration for backbone
• classifiers: pickled logistic regression models

The folder "data" contains a subset of input data on chr X:

• fast5_chrX: dRNA-Seq raw data from HEK293 WT mRNA
• GRCh38_96.X: genome reference
• GLORI_chrX.bed: query modification sites in bed format. This file specifically corresponds to those listed in GLORI.

The folder "expected_output" contains the expected output files generated by mAFiA on the demo data.