Published September 5, 2023
| Version v2023-09-05
Software
Open
obophenotype/uberon: v2023-09-05 Release
Creators
- Chris Mungall1
- Shawn Tan
- Nico Matentzoglu2
- Meghan Balk3
- Damien Goutte-Gattat4
- Anita Caron5
- paolaroncaglia
- Aleix Puig6
- PaulaDRoggli
- Nicole Vasilevsky7
- David Osumi-Sutherland8
- bvarner-ebi
- Jim Balhoff9
- Bill Duncan
- Ray Stefancsik
- Melissa Haendel
- Vassilis Virvilis10
- Maria Keays
- Martin Larralde11
- Wasila Dahdul
- Harshad1
- Tom Gillespie
- Charles Tapley Hoyt12
- helenamachado
- Bonita Lam13
- Ismail Ugur Bayindir
- diatomsRcool
- Benjamin M. Gyori12
- Nomi Harris1
- Sebastian Köhler14
- 1. Lawrence Berkeley National Laboratory
- 2. semanticly Ltd
- 3. National Ecological Observatory Network
- 4. University of Cambridge
- 5. EMBL-EBI
- 6. EBI-EMBL
- 7. Critical Path Institute
- 8. www.virtualflybrain.org
- 9. @RENCI
- 10. Biovista Inc
- 11. EMBL, @zellerlab
- 12. Northeastern University
- 13. Agilent Technologies
- 14. @adahealth
Description
What's Changed
- Add secretory coil of eccrine sweat gland and def to duct of eccrine sweat gland by @paulacalipho in https://github.com/obophenotype/uberon/pull/2916
- Add parents to orphaned terms by @shawntanzk in https://github.com/obophenotype/uberon/pull/2988
- Update page by @bvarner-ebi in https://github.com/obophenotype/uberon/pull/3000
- Update c_revise_textual_def.md by @nicolevasilevsky in https://github.com/obophenotype/uberon/pull/3006
- Update b_adding_synonym.md by @nicolevasilevsky in https://github.com/obophenotype/uberon/pull/3007
- Update uberon-idranges.owl by @aleixpuigb in https://github.com/obophenotype/uberon/pull/3012
- Add broad synonyms pararenal lymph node, para-renal lymph node and perirenal lymph node to renal lymph node by @paulacalipho in https://github.com/obophenotype/uberon/pull/3011
- Do not (try to) rebuild the merged developmental stage ontologies. by @gouttegd in https://github.com/obophenotype/uberon/pull/3010
- Add hra_depiction_3d_images component by @anitacaron in https://github.com/obophenotype/uberon/pull/3015
- Update uberon-editor-sop.md by @bvarner-ebi in https://github.com/obophenotype/uberon/pull/3023
- Addresses #3020 Edit nociceptor --> 'nociceptor nerve ending' by @bvarner-ebi in https://github.com/obophenotype/uberon/pull/3021
- Update editing_guidelines.md re: MeSH cross-references by @bvarner-ebi in https://github.com/obophenotype/uberon/pull/3026
- Undo using dev in QC and change "see also" in synonym annotation to xref by @matentzn in https://github.com/obophenotype/uberon/pull/3029
- Update guidance on adding URL dbxrefs (uberon-editor-sop.md) by @bvarner-ebi in https://github.com/obophenotype/uberon/pull/3030
- Addresses #3035 Edit 'pulmonary neuroendocrine body' by @bvarner-ebi in https://github.com/obophenotype/uberon/pull/3036
- Add lower limb skin to hindlimb skin by @paulacalipho in https://github.com/obophenotype/uberon/pull/3034
- Fixes #3019 Removes logical definition of 'endocrine system' by @aleixpuigb in https://github.com/obophenotype/uberon/pull/3039
- Cleaning up makefile by @gouttegd in https://github.com/obophenotype/uberon/pull/3028
- Add skin terms by @paulacalipho in https://github.com/obophenotype/uberon/pull/3044
- NTR: saphenous vein smooth muscle tissue by @paulacalipho in https://github.com/obophenotype/uberon/pull/3048
- 3049 Classify 'endocrine system' as a 'non-connected functional system'. by @gouttegd in https://github.com/obophenotype/uberon/pull/3050
- Add related synonym pretibial to front hindlimb zeugopod by @paulacalipho in https://github.com/obophenotype/uberon/pull/3041
- Closes #3043 NTR neuroendocrine system by @aleixpuigb in https://github.com/obophenotype/uberon/pull/3045
- Add CODEOWNERS file to Uberon by @matentzn in https://github.com/obophenotype/uberon/pull/3038
- 3051 Fix 'insect pharynx' bogus ID and add ID format check by @gouttegd in https://github.com/obophenotype/uberon/pull/3052
- Changing contains to be location_of. See https://github.com/oborel/obo-relations/pull/739 by @cmungall in https://github.com/obophenotype/uberon/pull/2998
- Update imports for release by @anitacaron in https://github.com/obophenotype/uberon/pull/3053
- 20230905 Release by @anitacaron in https://github.com/obophenotype/uberon/pull/3054
Full Changelog: https://github.com/obophenotype/uberon/compare/v2023-07-25...v2023-09-05
Files
obophenotype/uberon-v2023-09-05.zip
Files
(45.1 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/obophenotype/uberon/tree/v2023-09-05 (URL)