Published August 27, 2023 | Version 1.1.0
Dataset Open

hiPSC 3D immunofluorescence images, tiny test set

  • 1. Friedrich Miescher Institute for Biomedical Research

Description

Example dataset of human induced pluripotent stem cells, imaged at 40x magnification with a Yokogawa CV7000. This is a tiny subset of a larger experiment intended as a test dataset for Fractal: https://github.com/fractal-analytics-platform/fractal

It is a subset of this dataset: https://zenodo.org/record/7057076

1 Channel is included:

- C01: DAPI, nuclear stain

 

This dataset also contains a small Fractal workflow for standard processing

 

This dataset contains 2 Z levels for 2 field of views for this 1 channel, as well as (manually adjusted) metadata files from the Yokogawa CV7000.

 

The data was acquired in the Pelkmans lab in August 2020. The images have been converted from TIFF into PNG (lossless). 

Files

20200812-CardiomyocyteDifferentiation14-Cycle1_B03_T0001F001L01A01Z01C01.png