The cellular states and fates of shed intestinal cells
Creators
- 1. Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel
- 2. Department of Immunobiology, Yale University School of Medicine, New Haven, CT
- 3. Department of Systems Immunology, Weizmann Institute of Science, Rehovot, Israel
Description
Single cell data for "The cellular states and fates of shed intestinal cells" paper.
Folder: Count_tables and Objects
This folder contains BG subtracted UMI tables and metadata for both the fecal wash UMAP and the fecal/tissue enterocytes combined UMAP
1. BG_subtracted_count_table_all_Fecal_cells_before_filt.txt - BG subtracted UMI table of all cells before Seurat filtration and analysis
2. BG_subtracted_count_table_all_Fecal_cells_after_filt.txt - BG subtracted UMI table of all cells after Seurat filtration and analysis.
3. Metadata_all_Fecal_cells_after_filteration.txt - Metadata for "BG_subtracted_count_table_all_Fecal_cells_after_filt.txt"
4. Combine_all_Fecal_cells_Obj.rds - Seurat Object for BG_subtracted_count_table_all_Fecal_cells_after_filt.txt
5. BG_subtracted_count_table_all_Enterocytes_before_filt.txt - BG subtracted UMI table of all cells before Seurat filtration and analysis
6. BG_subtracted_count_table_all_Enterocytes_after_filt.txt - BG subtracted UMI table of all cells after Seurat filtration and analysis.
7. Metadata_all_Enterocytes_after_filteration.txt - Metadata for "BG_subtracted_count_table_all_Enterocytes_after_filt.txt"
8. Combine_Enterocytes_Obj.rds - Seurat Object for BG_subtracted_count_table_all_Enterocytes_after_filt.txt
Folder Codes
This folder contains unique codes used in the manuscript
1. segment_math_model.m - loads t_for_model
2. t_for_model
Files
Codes.zip
Files
(117.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:c518262d03b0c659247472772674813b
|
7.3 MB | Preview Download |
|
md5:3fda00dc4189248af64eef2ad35278de
|
109.9 MB | Preview Download |