Published August 8, 2023
| Version v0.28.2-beta
Software
Open
broadinstitute/gatk-sv: v0.28.2-beta
Creators
- 1. Broad Institute
- 2. Fulcrum Genomics
- 3. @broadinstitute
- 4. Dana-Farber Cancer Institute
- 5. @LokaHQ
- 6. @populationgenomics
- 7. @UMCCR
- 8. MGH
Description
Updates include
- Add high-level description of docker images and their build process
- Remove max GQ filtering from per sample QC
- Update protein-coding GTF to MANE v1.2
- Reference panel resources and critical bug fixes
- Add FilterGenotypes workflow
- Remove use of the file command
- Move PESR genotyping filter statuses to info fields
- Bug fix building samtools-cloud docker
- Bug fix Github actions out of disk error
- Sharded AnnotateVcf workflow
- Add Terra validation to Github actions
- Resolve new linting errors
- Deduplicate records and CPX variant IDs in ResolveComplexVariants
Full Changelog: https://github.com/broadinstitute/gatk-sv/compare/v0.28.1-beta...v0.28.2-beta
Files
broadinstitute/gatk-sv-v0.28.2-beta.zip
Files
(22.3 MB)
| Name | Size | Download all |
|---|---|---|
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md5:fd6699f0d2629594ae886d7264f8d957
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22.3 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/broadinstitute/gatk-sv/tree/v0.28.2-beta (URL)