There is a newer version of the record available.

Published August 8, 2023 | Version v0.28.2-beta
Software Open

broadinstitute/gatk-sv: v0.28.2-beta

Creators

  • 1. Broad Institute
  • 2. Fulcrum Genomics
  • 3. @broadinstitute
  • 4. Dana-Farber Cancer Institute
  • 5. @LokaHQ
  • 6. @populationgenomics
  • 7. @UMCCR
  • 8. MGH

Description

Updates include

  • Add high-level description of docker images and their build process
  • Remove max GQ filtering from per sample QC
  • Update protein-coding GTF to MANE v1.2
  • Reference panel resources and critical bug fixes
  • Add FilterGenotypes workflow
  • Remove use of the file command
  • Move PESR genotyping filter statuses to info fields
  • Bug fix building samtools-cloud docker
  • Bug fix Github actions out of disk error
  • Sharded AnnotateVcf workflow
  • Add Terra validation to Github actions
  • Resolve new linting errors
  • Deduplicate records and CPX variant IDs in ResolveComplexVariants

Full Changelog: https://github.com/broadinstitute/gatk-sv/compare/v0.28.1-beta...v0.28.2-beta

Files

broadinstitute/gatk-sv-v0.28.2-beta.zip

Files (22.3 MB)

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md5:fd6699f0d2629594ae886d7264f8d957
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Additional details

Related works

Is supplement to
https://github.com/broadinstitute/gatk-sv/tree/v0.28.2-beta (URL)