LORIS (Longitudinal Online Research and Imaging System)

What's Changed

• [EEG] Database Architecture for HED Tags by @jesscall in https://github.com/aces/Loris/pull/8036
• [dashboard][Study Progression] Add tooltip visualising of Total in line chart by @satvik-tha-god in https://github.com/aces/Loris/pull/8123
• [candidate_list] Remove meaningless Latest_Visit_Status column by @driusan in https://github.com/aces/Loris/pull/7759
• [publication] Add columns to publications by @pierre-p-s in https://github.com/aces/Loris/pull/7361
• [Core] Remove duplicated getActiveModules function by @driusan in https://github.com/aces/Loris/pull/7446
• [Form.js] No required min/max for numeric elements by @driusan in https://github.com/aces/Loris/pull/8197
• [new_profile] Use API for candidate creation and swal for success by @driusan in https://github.com/aces/Loris/pull/7755
• [EEG Browser] Add ability to view annotations in event panel and overlaid on signal viewer by @laemtl in https://github.com/aces/Loris/pull/8235
• [login] Add code sanitizer before dangerouslySetInnerHTML by @CamilleBeau in https://github.com/aces/Loris/pull/7491
• [EEG Browser] Annotations: Add new and HED tags by @laemtl in https://github.com/aces/Loris/pull/8236
• [dashboard] Use user site permissions for dashboard charts by @CamilleBeau in https://github.com/aces/Loris/pull/8132
• QueryEngine interface by @driusan in https://github.com/aces/Loris/pull/8215
• [DB schema] UNIQUE Project name by @xlecours in https://github.com/aces/Loris/pull/8243
• [instrument_builder] ADDED: field warnings for maximum length in Instrument Builder module by @satvik-tha-god in https://github.com/aces/Loris/pull/8112
• Add PHP 8.2 support, drop 8.0 support by @driusan in https://github.com/aces/Loris/pull/8264
• [bvl_feedback][dashboard] Add project/site specs to widget by @CamilleBeau in https://github.com/aces/Loris/pull/7848
• [Core] Allow parallel handling of requests from same session by @driusan in https://github.com/aces/Loris/pull/7445
• [LorisInstance] add getModule function by @driusan in https://github.com/aces/Loris/pull/8221
• [dataquery] Define new swagger schema for data query API by @driusan in https://github.com/aces/Loris/pull/8219
• [new_timepoint] only show null language option when multiple exist by @CamilleBeau in https://github.com/aces/Loris/pull/8253
• Add CITATION.cff file by @driusan in https://github.com/aces/Loris/pull/7513
• [candidate_parameters] Add date restriction for consent withdrawal by @zaliqarosli in https://github.com/aces/Loris/pull/8298
• [Modules] Replace Module->getDataDictionary with Module QueryEngine dictionary. by @driusan in https://github.com/aces/Loris/pull/8260
• [survey_accounts] Clean up after Email col removed by @zaliqarosli in https://github.com/aces/Loris/pull/8313
• [mri_violations] Convert module to React and update UI by @driusan in https://github.com/aces/Loris/pull/7473
• [Instrument] Remove exception from NDB_BVL_Instrument::factory by @driusan in https://github.com/aces/Loris/pull/8290
• [core] Remove \Module::factory, update remaining instances to $loris->getModule() by @driusan in https://github.com/aces/Loris/pull/8287
• [Core] Remove Database::singleton function by @driusan in https://github.com/aces/Loris/pull/8427
• Make the number of days since last login before making a user inactive a config by @cmadjar in https://github.com/aces/Loris/pull/8416
• [instruments] Display Candidate Age at Death if postMortem is true by @zaliqarosli in https://github.com/aces/Loris/pull/8362
• [session] Add date of status change to session table by @CamilleBeau in https://github.com/aces/Loris/pull/8350
• [candidate_parameters] Allow clearing of consent status by @CamilleBeau in https://github.com/aces/Loris/pull/7772
• [instruments/instrument_manager] Migrate instrument permissions from config.xml to database by @driusan in https://github.com/aces/Loris/pull/8302
• [Form.js] Add support for step to NumericElement by @driusan in https://github.com/aces/Loris/pull/8413
• [Form.js] Add placeholder option for TextareaElement by @driusan in https://github.com/aces/Loris/pull/8412
• [Form.js] Add DateTimeElement wrapper by @driusan in https://github.com/aces/Loris/pull/8410
• [Form.js] Add support for vertical Radio button groups by @driusan in https://github.com/aces/Loris/pull/8414
• [DQT] add delete feature by @kongtiaowang in https://github.com/aces/Loris/pull/8078
• [jsx/Panel.js] Improved Panel component with optional multiple views by @maltheism in https://github.com/aces/Loris/pull/8299
• [Issue tracker] change userID to full name by @regisoc in https://github.com/aces/Loris/pull/8451
• [dashboard/statistics] Reactification by @laemtl in https://github.com/aces/Loris/pull/8476
• [issue_tracker] Display attachments by @CamilleBeau in https://github.com/aces/Loris/pull/8346
• [API] Sites endpoint by @xlecours in https://github.com/aces/Loris/pull/7771
• [EEG] EEG Acquisition form by @regisoc in https://github.com/aces/Loris/pull/8443
• [Document Repository] Upload multiple files at once by @jeffersoncasimir in https://github.com/aces/Loris/pull/8289
• [EEG] EEG uploader module by @laemtl in https://github.com/aces/Loris/pull/8409
• [conflict_resolver/candidate_profile] Fix loading of conflict widget by @driusan in https://github.com/aces/Loris/pull/8569
• [media] changed permision check to media_read to enable media downloads by @KLaFleur in https://github.com/aces/Loris/pull/8671
• [EEG Browser] Addition of new changes to signal plot of electrophysiology_browser module from EEGNet by @jeffersoncasimir in https://github.com/aces/Loris/pull/8415
• [Imaging Browser] Fix caveat bug not showing when there are pipeline protocol violations by @cmadjar in https://github.com/aces/Loris/pull/8661
• [MRI violations] Fix multiple rows for file protocol violations not resolvable by @cmadjar in https://github.com/aces/Loris/pull/8662
• [candidate] Allow dob format Y-m by @CamilleBeau in https://github.com/aces/Loris/pull/8648
• [EEG Uploader] Handle Checksum value by @laemtl in https://github.com/aces/Loris/pull/8729
• [module_manager] Visibility of 'My Preferences' in menu reflects state by @jeffersoncasimir in https://github.com/aces/Loris/pull/8726
• [new_profile] Fix date requirements and formats with EDC by @charlottesce in https://github.com/aces/Loris/pull/8767
• [new_profile] DateElement in 'Y-m' Fix by @skarya22 in https://github.com/aces/Loris/pull/8775
• [Timepoint List] Hide visits that are from user unaffiliated projects by @skarya22 in https://github.com/aces/Loris/pull/8723
• [data_release] Permission not added to unversioned files if version specified by @charlottesce in https://github.com/aces/Loris/pull/8768
• [battery_manager] use visit controller to fetch visit list by @ridz1208 in https://github.com/aces/Loris/pull/8485
• [Core] PSCID uniqueness by @xlecours in https://github.com/aces/Loris/pull/8411

• @satvik-tha-god made their first contribution in https://github.com/aces/Loris/pull/8146
• @jeffersoncasimir made their first contribution in https://github.com/aces/Loris/pull/8223
• @violetwei made their first contribution in https://github.com/aces/Loris/pull/8321
• @GeorgeMurad made their first contribution in https://github.com/aces/Loris/pull/8278
• @KLaFleur made their first contribution in https://github.com/aces/Loris/pull/8671
• @charlottesce made their first contribution in https://github.com/aces/Loris/pull/8720
• @skarya22 made their first contribution in https://github.com/aces/Loris/pull/8724

Full Changelog: https://github.com/aces/Loris/compare/v24.1.4...v25.0.0

• API: Modified in v0.0.4-dev the candidate instrument data format returned by a GET request or provided as the body of a PUT/PATCH request. The values of all fields are now defined by the Data key instead of $InstrumentName (PR #7857)

• Require jsodc comments to have correct @return and @param values in javascript (PR #8266)
• Disable ESLint on build (prod instances) (PR #8229)

1. Get the 25.0.0 source code

2. Source the SQL/Release_patches/24.1_To_25.0_upgrade.sql SQL file into your database.

3. Run the following scripts:

   1. php tools/configuration_check.php This script is used to validate the configuration of LORIS. It checks configuration settings and server paths to make sure that the application and underlying architecture are set up to allow LORIS to run properly.
   2. php tools/single_use/migrate_instrument_permissions.php This script migrates instrument permissions from the config.xml to the new database tables that now store them.
   3. php tools/single_use/update_violations_resolved_hashes.sql.php _This script is intended for a one-time use only to update the hasing of the violations_resolved table. Not doing so will result in duplication of data in the violations_resolved tale when users update a resolution status for a violation._
4. Run make all from the LORIS root directory.
5. OPTIONAL: Run any cleanup patches in SQL/Archive/25.0/Cleanup/
6. OPTIONAL: Remove the <instrumentPermissions> tag from your config.xml which is no longer used after running the migration script.