Published May 31, 2023 | Version Version 1
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Supporting data for protein membrane simulations in "Recalibration of protein interactions in Martini 3"

  • 1. Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of5 Copenhagen, DK-2200 Copenhagen N, Denmark
  • 2. Department of Biology, University of6 Fribourg, Fribourg, Switzerland

Description

Coarse-grained molecular dynamics simulations of protein-membrane systems from "Recalibration of protein interactions in Martini 3". Simulations were run with the Martini 3.0 force field, along with two modified versions of Martini 3.0 in which the well-depth, ε, in the Lennard-Jones potential between all protein and water beads was rescaled by a factor λPW, ε in the Lennard-Jones potential between all protein beads was rescaled by a factor λPP. The simulation files are organized into one tar file for each rescaling approach. The simulation files are in xtc format, and are accompanied by a structure in gro format for system topology and a tpr file to start the simulation.

Files

protein-protein.zip

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