FAIR+E Pathogen data for surveillance and research: lessons from COVID-19
Creators
- 1. SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
- 2. Bioinformatics Unit, Institute of Health Carlos III, Madrid, Spain
- 3. Institute of Chemistry, The Arctic University of Norway, Tromsø, Norway
- 4. CNRS, Institut Français de Bioinformatique, IFB-core, UMS 3601, Evry, France
- 5. CNRS, Institut Français de Bioinformatique, IFB-core, UMS 3601, Evry, France; Aix-Marseille Univ, INSERM, Lab. Theory and Approaches of Genome Complexity (TAGC), Marseille, France
- 6. European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, UK
- 7. ELIXIR Norway, Centre for Bioinformatics, University of Oslo, Norway
- 8. Bioinformatics Department, The Cyprus Institute of Neurology and Genetics, Nicosia, Cyprus
- 9. Department of Molecular Virology, Institute of Bioorganic Chemistry Polish Academy of Sciences, Poznan, Poland
- 10. NBIS National Bioinformatics Infrastructure Sweden, SciLifeLab, Uppsala University, Uppsala, Sweden
- 11. ELIXIR Norway, Department of Informatics, University of Bergen, Norway
- 12. ELIXIR Hub, Wellcome Genome Campus, Hinxton, Cambridge, UK
Description
The COVID-19 pandemic has exemplified the importance of interoperable and equitable data sharing for global surveillance and to support research. While many challenges could be overcome, at least in some countries, many hurdles within the organisational, scientific, technical and cultural realms still remain to be tackled to be prepared for future threats. We propose to (i) continue supporting global efforts that have proven to be efficient and trustworthy towards addressing challenges in pathogen molecular data sharing; (ii) establish a distributed network of Pathogen Data Platforms to (a) ensure high quality data, metadata standardization and data analysis, (b) perform data brokering on behalf of data providers both for research and surveillance, (c) foster capacity building and continuous improvements, also for pandemic preparedness; (iii) establish an International One Health Pathogens Portal, connecting pathogen data isolated from various sources (human, animal, food, environment), in a truly One Health approach and following FAIR principles. To get started in these challenging endeavors, we started an ELIXIR Focus Group and invite all interested experts to join in this concerted, expert-driven effort towards sustaining and ensuring high-quality data for global surveillance and research.
Files
Whitepaper PDP-IOPP - FINAL.pdf
Files
(463.4 kB)
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