Published June 28, 2023
| Version splitter-preprint
Software
Open
ablab/spades: SpLitteR: early access version
Creators
- Anton Korobeynikov
- Sergey Nurk1
- Dmitry Antipov
- Andrey Prjibelski2
- Mikhail Dvorkin3
- AntonBankevich
- Nikolay Vyahhi
- Alexey Gurevich4
- Alexander Sirotkin
- Yulia Gorshkova
- Mariya Davydova
- Sergey Nikolenko
- Yakov Sirotkin
- Alex
- Olga Kunyavskaya
- Alex Davydow
- valery-l
- Alexander S. Kulikov
- Alexander Shlemov5
- Anton Kleshchin
- vasilinetc.ira@gmail.com
- Alexander Opeykin
- Son Pham6
- Valentin Fondaratov7
- Artem Tarasov
- Dmitry Meleshko
- Yana Safonova8
- Elena Bushmanova9
- Anton Garder
- YURRY
- 1. Oxford Nanopore Technologies
- 2. University of Helsinki
- 3. Lyceum PTHS
- 4. HIPS
- 5. Microsoft
- 6. UCSD
- 7. @JetBrains
- 8. JHU
- 9. CAB, SPSU
Description
SpLitteR is a tool that uses linked reads to improve the contiguity of HiFi assemblies. Given a linked-read library and a HiFi assembly graph in the GFA format, SpLitteR resolves repeats in the assembly graph using linked-reads and generates a simplified (more contiguous) assembly graph with corresponding scaffolds.
This is an early preview version of SpLitteR to supplement the publication.
Files
ablab/spades-splitter-preprint.zip
Files
(20.9 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/ablab/spades/tree/splitter-preprint (URL)