June 12, 2017 Software Open Access

TGuillerme/mulTree: v1.2.7

Thomas Guillerme; Kevin Healy

• 2017/06/12 - v1.2.7
  • Minor fix to clean.data to properly deal with data frames.
• 2017/05/15 - v1.2.6
  • Removed caper dependencies.
  • Minor fixes to code internal documentation.
  • coda::gelman.diag in mulTree now only outputs a warning rather than a stop message
  • Allows R-structure's standrad multi-response model in as.mulTree (e.g. rand.terms = ~taxa + specimen + us(trait):observation).
• 2017/01/09 - v1.2.5
  • Added minor sanitising function to mulTree the formula now has to match the data set column names.
  • Fixed a bug with the parallel option in mulTree: only one cluster is now generated at the start of the function rather than one at each iteration.
  • Fixed a minor bug with as.mulTree: the random terms formula's environment is not anymore exported by the function when set up by default.
• 2016/08/10 - v1.2.4
  • Fixed a bug in the convergence test where the convergence was not ran on the VCV matrix.
  • Models memory management is now safer and is done only out of R environment leading to minor speed improvements in mulTree function.
  • Some errors are now more verbose in mulTree and summary.mulTree.
  • Fixed bug with plot.mulTree that didn't allow to plot more than 5 parameters.
• 2016/07/06 - v1.2.3
  • External functions are now properly imported via the NAMESPACE.
  • New phylogenetic analysis markdown vignette!
• 2016/02/19 - v1.2.2
  • major bug fix in mulTree where models saved out of R environment where accumulating data from former models (now fixed: each model saved out of the R environment contains only data for the target model).
• 2016/01/25 - v1.2.1
  • minor bug fix in summary.mulTree that can now deal with multiple hdr for each probabilities.
  • minor bug fix in plot.mulTree with the number of terms used