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TGuillerme/mulTree: v1.2.7

Thomas Guillerme; Kevin Healy

  • 2017/06/12 - v1.2.7
    • Minor fix to clean.data to properly deal with data frames.
  • 2017/05/15 - v1.2.6
    • Removed caper dependencies.
    • Minor fixes to code internal documentation.
    • coda::gelman.diag in mulTree now only outputs a warning rather than a stop message
    • Allows R-structure's standrad multi-response model in as.mulTree (e.g. rand.terms = ~taxa + specimen + us(trait):observation).
  • 2017/01/09 - v1.2.5
    • Added minor sanitising function to mulTree the formula now has to match the data set column names.
    • Fixed a bug with the parallel option in mulTree: only one cluster is now generated at the start of the function rather than one at each iteration.
    • Fixed a minor bug with as.mulTree: the random terms formula's environment is not anymore exported by the function when set up by default.
  • 2016/08/10 - v1.2.4
    • Fixed a bug in the convergence test where the convergence was not ran on the VCV matrix.
    • Models memory management is now safer and is done only out of R environment leading to minor speed improvements in mulTree function.
    • Some errors are now more verbose in mulTree and summary.mulTree.
    • Fixed bug with plot.mulTree that didn't allow to plot more than 5 parameters.
  • 2016/07/06 - v1.2.3
    • External functions are now properly imported via the NAMESPACE.
    • New phylogenetic analysis markdown vignette!
  • 2016/02/19 - v1.2.2
    • major bug fix in mulTree where models saved out of R environment where accumulating data from former models (now fixed: each model saved out of the R environment contains only data for the target model).
  • 2016/01/25 - v1.2.1
    • minor bug fix in summary.mulTree that can now deal with multiple hdr for each probabilities.
    • minor bug fix in plot.mulTree with the number of terms used

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