Published June 15, 2023
| Version 3.2.2
Software
Open
nf-core/sarek: Sarek 3.2.2 - Vuoinesluobbalah
Creators
- Maxime U Garcia1
- Friederike Hanssen2
- Anders Sune Pedersen3
- Gisela Gabernet
- WackerO
- SusiJo
- Chela James4
- Alexander Peltzer5
- nickhsmith
- José Fernández Navarro
- nf-core bot
- Edmund Miller
- David Mas-Ponte6
- Malin Larsson7
- Adam Talbot8
- Szilveszter Juhos9
- ameynert
- Abhinav Sharma10
- Adrian Lärkeryd11
- Francesco Lescai
- Lasse Folkersen12
- Lucia Conde13
- Bruno Grande14
- Matilda Åslin15
- BarryDigby
- Harshil Patel16
- Paul Cantalupo
- Phil Ewels8
- Venkat Malladi
- Robert Syme16
- 1. @seqeralabs | Stockholm
- 2. QBiC
- 3. Dep. of Molecular Medicine (MOMA)
- 4. Fondazione Human Technopole
- 5. Boehringer Ingelheim
- 6. @GenomeDataScience
- 7. SciLifeLab
- 8. @seqeralabs
- 9. Morgan Stanley Budapest
- 10. @biosharp-dotnet
- 11. ICR
- 12. NucleusGenomics | mynucleus.com
- 13. University College London
- 14. @Sage-Bionetworks
- 15. Uppsala University, SciLifeLab Genomics, NGI Uppsala
- 16. Seqera Labs
Description
What's Changed
- FIX: Fix default memory issue with gatk4/createsequencedictionary by @maxulysse in https://github.com/nf-core/sarek/pull/1087
- Fix ascat manual test by @asp8200 in https://github.com/nf-core/sarek/pull/1093
- FIX: Mutect2 subworkflow by @maxulysse in https://github.com/nf-core/sarek/pull/1098
- FIX: Deepvariant duplicate index by @maxulysse in https://github.com/nf-core/sarek/pull/1100
- FIX: Remove params.tracedir by @maxulysse in https://github.com/nf-core/sarek/pull/1105
- FEAT: Add slack notification for megatests by @maxulysse in https://github.com/nf-core/sarek/pull/1106
- Remove redundant index computation for MD & version for MD Spark by @FriederikeHanssen in https://github.com/nf-core/sarek/pull/1101
- update config by @maxulysse in https://github.com/nf-core/sarek/pull/1107
- fix bcftools mpileup by @FriederikeHanssen in https://github.com/nf-core/sarek/pull/1109
Full Changelog: https://github.com/nf-core/sarek/compare/3.2.1...3.2.2
Files
nf-core/sarek-3.2.2.zip
Files
(12.8 MB)
| Name | Size | Download all |
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md5:ca5b9bb0f2a30b8e375320f252e98b21
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12.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/nf-core/sarek/tree/3.2.2 (URL)