Dynamic calcium-mediated stress response and recovery signatures in the fungal pathogen, Candida albicans- GCaMP Analysis Software

C_albicans_GCaMP_CSA.zip

Calcium Spike Analysis (CSA) MATLAB software developed by Prof Mark Fricker (University of Oxford) for GCaMP6 signal analysis in C. albicans.

MATLAB APP install files included in ZIP files for CSA analysis and GCaMP spike plotting software.

Please see Preprint: Dynamic calcium-mediated stress response and recovery signatures in the fungal pathogen, Candida albicans in BioRxiv for more information on how the software is used to analyse data: https://doi.org/10.1101/2023.04.20.537637

Dependencies for Software: MATLAB plus the following toolboxes: •'Signal Processing Toolbox' • 'Image Processing Toolbox' • 'Statistics and Machine Learning Toolbox' • 'Curve Fitting Toolbox' • 'Bioinformatics Toolbox' • 'Computer Vision System Toolbox'

BioFormats package for importing microscopy data (http://www.openmicroscopy.org/), ensure this is in your MATLAB search path when installed

The latest version of Java (http://www.java.com/en/)

GhostScript: http://www.ghostscript.com/

XPDF Reader :https://www.xpdfreader.com/download.html