Published June 1, 2023
| Version 1.0
Dataset
Open
Repeat annotation of a chromosomal-level assembly of the Callosobruchus maculatus genome
Creators
- 1. Animal Ecology, Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden.
- 2. Rheumatology, Department of Medical Sciences, Uppsala University, Uppsala, Sweden.
- 3. Evolutionary Biology, Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden
- 4. School of Biological Sciences, University of Adelaide, Adelaide, SA 5005, Australia
- 5. Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
- 6. Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Sweden.
- 7. Science for Life Laboratory, Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, Sweden.
- 8. Systematic Biology, Department of Organismal Biology, Uppsala University, Uppsala, Sweden
Description
A curated repeat library <c.mac_HiC_plus_beetle_library.lib> was constructed by manually curating the most abundant interspersed repeats identified using RepeatModeler (Smit et al., 2010). The curated library was combined with a beetle-specific library, constructed using RepeatMasker’s queryRepeatDatabase.pl script (-species coleoptera). The genome repeat annotation was generated with RepeatMasker (Smit and Hubley, 2010).
Files
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md5:9cbd1cc620cbf91868fea749450da476
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md5:0fede66592d7ac1b7e668ae0aa8127b9
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6.2 MB | Download |