cooler

Cooler is a Python support library for .cool files: an efficient storage format for high resolution genomic interaction matrices. The cooler package aims to provide the following functionality: * Build contact matrices at any genomic resolution. * Query contact matrices. * Export and visualize the data. * Perform scalable out-of-core operations on the data. * Provide a clean and well-documented Python API to interact with the data. Follow cooler development on GitHub.