Published May 30, 2023
| Version v1.0.0
Software
Open
hdr-bgnn/Morphology-analysis: Version 1.0.0
- 1. National Ecological Observatory Network, Battelle Memorial Institute
- 2. Duke University School of Medicine
Description
Release created to populate Zenodo.
This code base produces a presence-absence table (default), create landmarks (optional), visualization of landmarks (optional), and extracts measurements (optional) from a segmented fish image (see BGNN-trait-segmentation).
Secondarily, this repository provides a framework for creating modularized tools by using classes.
A Docker container image of this codebase and its dependencies is automatically built and published each time a new release is published. The Docker container isolates dependencies and facilitates reproducible and version-tagged integration into Imageomics workflows (see for example the BGNN Core Workflow).
This tool was originally developed for the Minnows Project.
Files
hdr-bgnn/Morphology-analysis-v1.0.0.zip
Files
(637.9 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:f8988a769ac4d846fbcc8b9d515106ec
|
637.9 kB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/hdr-bgnn/Morphology-analysis/tree/v1.0.0 (URL)
Funding
- HDR Institute: Imageomics: A New Frontier of Biological Information Powered by Knowledge-Guided Machine Learning 2118240
- National Science Foundation
- Collaborative Research: Biology-guided neural networks for discovering phenotypic traits 2022042
- National Science Foundation