Extreme dynamics of a small molecule in its bound state with an intrinsically disordered protein
- 1. University College London
Description
These data support the manuscript entitled "Extreme dynamics of a small molecule in its bound state with an intrinsically disordered protein" by Heller, Shukla, Figueiredo, and Hansen.
This data should be used with the code provided on GitHub at https://github.com/hansenlab-ucl/R2_IDP_small_mol. Once downloaded, this directory should be extracted using the following command:
tar -xzvf Data.tar.gz
The directory should be saved with the name 'Data' placed in the same directory as the GitHub README.md file.
This dataset contains:
Nuclear Magnetic Resonance (NMR) spectroscopy data files (.ft2 format) including:
* 1H 1D ligand-detected chemical shift titration of 5-fluoroindole (50 uM) with increasing concentrations of the protein, non-structural protein 5A, domains 2 and 3 (NS5A-D2D3), in 1H_1D_ft2_data/
* 1H pseudo-2D Diffusion Ordered SpectroscopY (DOSY) data of 5-fluoroindole (50 uM) with and without NS5A-D2D3 (75 uM) in 1H_DOSY_data/
* 1H-15N Heteronuclear Single Quantum Coherence (HSQC) measurements of NS5A-D2D3 (40 uM) in the absence and presence of 5-fluoroindole (160 and 320 uM) in 1H_15N_HSQC_ft2_and_metadata/
* 19F 1D ligand-detected chemical shift titration of 5-fluoroindole (50 uM) with increasing concentrations of NS5A-D2D3 in 19F_1D_ft2_data/
* 19F pseudo-2D ligand-detected longitudinal (spin-lattice, R1,eff) relaxation titration data of 5-fluoroindole (50 uM) with increasing concentrations of NS5A-D2D3 in 19F_R1eff_ft2_data/
* 19F pseudo-2D ligand-detected longitudinal (spin-spin, R2,eff) relaxation titration data of 5-fluoroindole (50 uM) with increasing concentrations of NS5A-D2D3 in 19F_R2eff_ft2_data/
Circular Dichroism (CD) data files (.txt format) including:
* CD measurements of NS5A-D2D3 at increasing concentrations in CD_data/no_molecule/
* CD measurements of NS5A-D2D3 with and without the small molecule, 5-fluoroindole CD_data/with_molecule/
Metadata
* Metadata from the Biological Magnetic Resonance Data Bank (https://bmrb.io/) used to determine scaling factors for the calculation of chemical shift perturbations in 1H_15N_HSQC_ft2_and_metadata/
Files
README_Zenodo.md
Files
(30.1 MB)
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Additional details
Funding
- UK Research and Innovation
- Integrative Approaches for Characterising Small-Molecule Binding to Disordered Proteins BB/X009955/1
- Wellcome Trust
- Institutional Strategic Support Fund 204841
- Wellcome Trust
- The UCL Integrated NMR Centre:Bridging fine-scale analysis of macromolecules and cell physiology with high-throughput population scale metabolomics, drug target validation and biomarker development . 101569
- UK Research and Innovation
- Characterising structure, interactions and dynamics of large molecular machines and intrinsically disordered proteins using novel carbon-detected NMR BB/R000255/1