Published May 3, 2023 | Version 1
Dataset Open

SILVA 138 SSURef NR99 database formatted for phyloFlash

Creators

  • 1. Thünen Institute for Biodiversity

Contributors

Description

Small-subunit ribosomal RNA reference database from SILVA release 138, formatted for use with phyloFlash (https://github.com/HRGV/phyloFlash) (version >=3.4). phyloFlash is a pipeline for rapid screening and targeted assembly of SSU rRNA sequences from short-read metagenomic or transcriptomic datasets.

Please see README.md for more details and license information.

Files

README.md

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Additional details

Related works

Is compiled by
Software: https://github.com/HRGV/phyloFlash (URL)
Is derived from
Dataset: https://www.arb-silva.de/fileadmin/silva_databases/release_138/Exports/SILVA_138_SSURef_NR99_tax_silva_trunc.fasta.gz (URL)
Dataset: http://www.ncbi.nlm.nih.gov/tools/vecscreen/univec/ (URL)

References

  • 10.1128/mSystems.00920-20
  • 10.1093/nar/gks1219
  • 10.1093/nar/gkt1209