Published May 2, 2023
| Version v1.0.1
Software
Open
MunskyGroup/Multiplexing_project: Publication code - Zenodo
Description
All codes to regenerate data/ML experiments for the following paper:
Using mechanistic models and machine learning to design single-color multiplexed Nascent Chain Tracking experimentsWilliam S. Raymond<sup>1</sup>, Sadaf Ghaffari<sup>2</sup>, Luis U. Aguilera<sup>3</sup>, Eric M. Ron<sup>1</sup>, Tatsuya Morisaki<sup>4</sup>, Zachary R. Fox<sup>1,5</sup>, Michael P. May<sup>1</sup>, and Timothy J. Stasevich<sup>4,6</sup>, Brian Munsky<sup>1,3,*</sup>
<sub><sup>
- School of Biomedical Engineering, Colorado State University, Fort Collins, Colorado, USA
- Department of Computer Science, Colorado State University, Fort Collins, Colorado, USA
- Department of Chemical and Biological Engineering, Colorado State University, Fort Collins, Colorado, USA
- Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA
- Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
- Cell Biology Unit, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan </sup></sub>
For questions about the codes, please contact: wsraymon@rams.colostate.edu, Luis.aguilera@colostate.edu and brian.munsky@colostate.edu
Several large movie files are omitted that are used to make Figure 9 and Figure 3, these can be provided upon request.
- multiplexing_7_1.tif
- P300_KDM5B_base_experiment/base_experiment0.tif
- P300_KDM5B_base_experiment/base_experiment1.tif
- P300_KDM5B_base_experiment/base_experiment2.tif
Files
MunskyGroup/Multiplexing_project-v1.0.1.zip
Files
(535.5 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/MunskyGroup/Multiplexing_project/tree/v1.0.1 (URL)