Published April 24, 2023
| Version 1.0.0
Dataset
Open
Supplementary data for "WebQUAST: online evaluation of genome assemblies"
Authors/Creators
- 1. Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, University College London, London WC1E 6BT, UK
- 2. Centre for Population Genomics, Garvan Institute of Medical Research and UNSW Sydney, Sydney, New South Wales 2010, Australia; Centre for Population Genomics, Murdoch Children's Research Institute, Melbourne, Victoria 3052, Australia
- 3. Chair for Clinical Bioinformatics, Saarland University, Saarbrucken 66123, Germany
- 4. Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research, Saarbrucken 66123, Germany; Department of Computer Science, Saarland University, Saarbrucken 66123, Germany
Description
Supplementary data for A. Mikheenko, V. Saveliev, P. Hirsch, A. Gurevich. WebQUAST: online evaluation of genome assemblies.
Reference genomes of two Escherichia coli K-12 substrains (MG1655 and W3110) and genome annotation of MG1655.
De novo assemblies of the Escherichia coli K-12 MG1655 short-read Illumina dataset (ERR008613) with ABySS, MEGAHIT, SPAdes, and Velvet.
WebQUAST reports in three evaluation modes:
* Use Case 1: reference-free evaluation (sample_data_no_ref)
* Use Case 2: reference-based evaluation (sample_data_true_ref)
* Use Case 3: evaluation based on a close reference (sample_data_close_ref)
The snapshot (commit 2bd5060) of the QUAST command-line version used by WebQUAST for generating the reports.