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Published April 18, 2023 | Version v1.0.6
Software Open

JannesSP/magnipore: v1.0.6

Creators

  • 1. Friedrich Schiller University Jena

Description

Add Cookiecutter Conda Recipe & Error Exit Codes

Error Codes:

  • 11: Concatenating both reference files failed
  • 12: Building mafft alignment failed
  • 13: Running nanosherlock for the first sample failed

  • 14: Running nanosherlock for the second sample failed

  • 121: Guppy basecalling failed in first sample

  • 122: minimap2 mapping failed in first sample
  • 123: Samtools indexing failed in first sample
  • 124: Nanopolish indexing failed in first sample
  • 125: Nanopolish eventalign failed in first sample
  • 126: Could not find provided fastq files for first sample

  • 127: Could not find provided sequencing summary file for first sample

  • 221: Guppy basecalling failed in second sample

  • 222: minimap2 mapping failed in second sample
  • 223: Samtools indexing failed in second sample
  • 224: Nanopolish indexing failed in second sample
  • 225: Nanopolish eventalign failed in second sample
  • 226: Could not find provided fastq files for second sample
  • 227: Could not find provided sequencing summary file for second sample

Files

JannesSP/magnipore-v1.0.6.zip

Files (405.2 kB)

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md5:e0f21d8f658f0e3935087a743896c5f8
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Additional details

Related works

Is supplement to
https://github.com/JannesSP/magnipore/tree/v1.0.6 (URL)