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Published April 4, 2023 | Version v0.6.0
Software Open

ytakemon/GRETTA: v0.6.0

Creators

  • 1. Canada's Michael Smith Genome Sciences Centre, University of British Columbia

Description

  • Version 0.5.0 was submitted to Bioinformatics and version 0.6.0 addresses several reviewer comments (detailed below).
  • GRETTA is now GRETTA (with two T's) due conflict with existing package on CRAN.
  • Upon loading GRETTA into R, a welcome message is displayed to indicate package version and the latest DepMap data set that is available.
  • Function arguments are now all lower case.
  • GI_screen() has a new argument gene_list = to allow small-scale GI screens and reduce computational time.
  • Default pan-cancer coessential_map() now uses pre-computed cor matrix to reduce computational time. This matrix is provided along with the DepMap data.
  • A vignette is now available and in a Bioconductor format to prepare for submission (same as readme).
  • Examples are now mostly run-able to comply with Bioconductor.

Files

ytakemon/GRETTA-v0.6.0.zip

Files (1.6 MB)

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md5:bd251a2c276ed32466662b4d878ab258
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Additional details

Related works

Is supplement to
https://github.com/ytakemon/GRETTA/tree/v0.6.0 (URL)