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SPAAM-Community

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Published March 31, 2023 | Version v23.03.0
Software Open

SPAAM-community/AncientMetagenomeDir: v23.03.0: Rocky Necropolis of Pantalica

Creators

  • 1. HKI Jena, MPI-EVA Leipzig
  • 2. Max Planck Institute for Evolutionary Anthropology
  • 3. University of Warwick
  • 4. Max Planck institute for Evolutionary Anthropology
  • 5. Stockholm University
  • 6. LIIGH
  • 7. Utrecht University
  • 8. University of Otago
  • 9. Leibniz Institute for Natural Product Research and Infection Biology, Jena
  • 10. University of Texas at Austin
  • 11. Max Planck Institute for the Science of Human History
  • 12. TU Delft
  • 13. Uppsala University

Description

Release v23.03.0 includes 8 new publications, representing 110 new ancient host-associated metagenome samples, 23 new ancient microbial genomes, and 52 new ancient environmental samples. This brings the repository to a total of 161 publications, 1358 ancient host-associated metagenome samples, 583 ancient microbial genomes, and 536 ancient environmental samples

Furthermore, this release adds 180 new ancient host-associated metagenome libraries, 98 new ancient microbial genome libraries, and 64 new ancient environmental libraries. This brings the repository to a total of 2332 ancient host-associated metagenome libraries, 2278 ancient microbial genomes libraries, and 627 ancient environmental libraries.

Corrections were made to 3 publications.

Added Ancient Metagenome: Host Associated
  • Moraitou 2022 10.1093/molbev/msac263 (added by @alexhbnr)
  • Quagliariello 2022 10.1038/s41467-022-34416-0 (added by @alexhbnr)
  • Sarhan 2023 10.1186/s12915-022-01509-7 (added by @msabrysarhan)
Ancient Single Genome: Host Associated
  • Braun 2020 10.3390/microorganisms8020298 (added by @jfy133)
  • Quagliariello 2022 10.1038/s41467-022-34416-0 (added by @DianaSpurite)
  • Bonczarowska 2022 10.1186/s13059-022-02806-8 (added by @DianaSpurite)
  • Eaton 2023 10.1016/j.cub.2023.01.064 (added by @DianaSpurite)
  • Rifkin 2023 10.1038/s42003-023-04582-y (added by @mibr30)
  • Sarhan 2023 10.1186/s12915-022-01509-7 (added by @msabrysarhan)
Ancient Metagenome: Environmental
  • Kjaer 2022 10.1038/s41586-022-05453-y (added by @ktozdogan)
  • Nwosu 2023,10.1038/s42003-023-04430-z (added by @ktozdogan)
Changed
  • Fixed md5sum hash error of a Ozga2019 sample
  • Fixed md5sum hash error of a Granehall2021 sample
  • Replace URLs of Velsko2022 with the ones from the column "fastq_ftp" instead of the column "submitted_ftp" from ENA
Rocky Necropolis of Pantalica

The site consists of two separate elements, containing outstanding vestiges dating back to Greek and Roman times: The Necropolis of Pantalica contains over 5,000 tombs cut into the rock near open stone quarries, most of them dating from the 13th to 7th centuries BC. Vestiges of the Byzantine era also remain in the area, notably the foundations of the Anaktoron (Prince's Palace). The other part of the property, Ancient Syracuse, includes the nucleus of the city's foundation as Ortygia by Greeks from Corinth in the 8th century BC. The site of the city, which Cicero described as 'the greatest Greek city and the most beautiful of all', retains vestiges such as the Temple of Athena (5th century BC, later transformed to serve as a cathedral), a Greek theatre, a Roman amphitheatre, a fort and more. Many remains bear witness to the troubled history of Sicily, from the Byzantines to the Bourbons, interspersed with the Arabo-Muslims, the Normans, Frederick II of the Hohenstaufen dynasty (1197–1250), the Aragons and the Kingdom of the Two Sicilies. Historic Syracuse offers a unique testimony to the development of Mediterranean civilization over three millennia.

Description is available under license CC-BY-SA IGO 3.0

Files

SPAAM-community/AncientMetagenomeDir-v23.03.0.zip

Files (23.3 MB)

Additional details

Related works

Is supplement to
https://github.com/SPAAM-community/AncientMetagenomeDir/tree/v23.03.0 (URL)