Published August 23, 2024 | Version v0.2.5
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Trained model and embedded databases for Progres, software for searching protein structures using graph embeddings

  • 1. MRC Laboratory of Molecular Biology

Description

Progres is software for fast protein structure searching using structure graph embeddings and can be found at https://github.com/greener-group/progres. It is described in https://www.biorxiv.org/content/10.1101/2022.11.28.518224.

The trained neural network model and pre-embedded structural databases for SCOPe, CATH, ECOD, the whole PDB, AlphaFold structures for 21 model organisms and the AlphaFold database TED domains are stored here. They are automatically downloaded during software installation.

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