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Jupyter notebook and VASP calculation details accompanying the manuscript: "Ultima Ratio: Simulating wide-range X-ray scattering and diffraction"

Pauw, Brian Richard; Laskina, Sofya; Naik, Aakash; Smales, Glen Jacob; George, Janine; Breßler, Ingo; Benner, Philipp

## Summary:

This notebook and associated datasets (including VASP details) accompany a manuscript available on the ArXiv (https://doi.org/10.48550/arXiv.2303.13435) and hopefully soon in a journal as short communication as well. Most of the details needed to understand this notebook are explained in that paper with the same title as above. For convenience, the abstract is repeated here:

## Paper abstract:

We demonstrate a strategy for simulating wide-range X-ray scattering patterns, which spans the small- and wide scattering angles as well as the scattering angles typically used for Pair Distribution Function (PDF) analysis. Such simulated patterns can be used to test holistic analysis models, and, since the diffraction intensity is presented coupled to the scattering intensity, may offer a novel pathway for determining the degree of crystallinity.

The ``Ultima Ratio'' strategy is demonstrated on a 64-nm Metal Organic Framework (MOF) particle, calculated from $Q<0.01$\,$\mathrm{nm}^{-1}$ up to $Q\approx150$\,$\mathrm{nm}^{-1}$, with a resolution of 0.16\,\AA. The computations exploit a modified 3D Fast Fourier Transform (3D-FFT), whose modifications enable the transformations of matrices at least up to $8000^3$ voxels in size. Multiple of these modified 3D-FFTs are combined to improve the low-$Q$ behaviour.  

The resulting curve is compared to a wide-range scattering pattern measured on a polydisperse MOF powder.

While computationally intensive, the approach is expected to be useful for simulating scattering from a wide range of realistic, complex structures, from (poly-)crystalline particles to hierarchical, multicomponent structures such as viruses and catalysts.

Files (27.0 GB)
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3D_HighRes_FFT_v1p1.ipynb
md5:a66fc3116547c2355cafbb46acd38c24
49.7 kB Download
CHGCAR_sum
md5:6532729eb45a02681acf5e321dde8fee
4.8 GB Download
density_to_HDF.ipynb
md5:6f60d799b8ec30f81b435525c1b3f7e2
1.2 MB Download
Flowchart.drawio
md5:bb5d76aff2b7a7a7ba88f1803d0ae3f0
2.1 kB Download
Flowchart.pdf
md5:f66475779bd6f309c4806886164b9ebb
39.4 kB Download
merged_AutoMOFs04_T005.nxs
md5:1a041dcbf41abbcec87b32e99c0dc437
851.6 kB Download
merged_AutoMOFs_4_T005_tunedMerge.dat
md5:a7f1772ba102f7a03d006310b422cf78
22.9 kB Download
MOF_new.h5
md5:afb6ed296446e31032255013dd5e4ee2
1.0 GB Download
SAXS-simulations.zip
md5:de4b204bf4db28c1c1b192313d6aeeb0
2.0 MB Download
VASP-calculations.zip
md5:3745978b5a2f474c86100fcb0d6d4854
6.8 MB Download
VASP-results-chargedensity.zip
md5:48b3219c73c73c8acff754d1e99d4fec
15.6 GB Download
VASP-results-convertest.zip
md5:675d54ec537ac0cd72bedc887765cee6
5.6 GB Download
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