Info: Zenodo’s user support line is staffed on regular business days between Dec 23 and Jan 5. Response times may be slightly longer than normal.

Published March 23, 2023 | Version v1.0.0
Software Open

Jupyter notebook and VASP calculation details accompanying the manuscript: "Ultima Ratio: Simulating wide-range X-ray scattering and diffraction"

  • 1. BAM Bundesanstalt für Materialforschung und -Prüfung, 12205 Berlin

Description

## Summary:

This notebook and associated datasets (including VASP details) accompany a manuscript available on the ArXiv (https://doi.org/10.48550/arXiv.2303.13435) and hopefully soon in a journal as short communication as well. Most of the details needed to understand this notebook are explained in that paper with the same title as above. For convenience, the abstract is repeated here:

## Paper abstract:

We demonstrate a strategy for simulating wide-range X-ray scattering patterns, which spans the small- and wide scattering angles as well as the scattering angles typically used for Pair Distribution Function (PDF) analysis. Such simulated patterns can be used to test holistic analysis models, and, since the diffraction intensity is presented coupled to the scattering intensity, may offer a novel pathway for determining the degree of crystallinity.

The ``Ultima Ratio'' strategy is demonstrated on a 64-nm Metal Organic Framework (MOF) particle, calculated from $Q<0.01$\,$\mathrm{nm}^{-1}$ up to $Q\approx150$\,$\mathrm{nm}^{-1}$, with a resolution of 0.16\,\AA. The computations exploit a modified 3D Fast Fourier Transform (3D-FFT), whose modifications enable the transformations of matrices at least up to $8000^3$ voxels in size. Multiple of these modified 3D-FFTs are combined to improve the low-$Q$ behaviour.  

The resulting curve is compared to a wide-range scattering pattern measured on a polydisperse MOF powder.

While computationally intensive, the approach is expected to be useful for simulating scattering from a wide range of realistic, complex structures, from (poly-)crystalline particles to hierarchical, multicomponent structures such as viruses and catalysts.

Files

3D_HighRes_FFT_v1p1.ipynb

Files (27.0 GB)

Name Size Download all
md5:a66fc3116547c2355cafbb46acd38c24
49.7 kB Preview Download
md5:6532729eb45a02681acf5e321dde8fee
4.8 GB Download
md5:6f60d799b8ec30f81b435525c1b3f7e2
1.2 MB Preview Download
md5:bb5d76aff2b7a7a7ba88f1803d0ae3f0
2.1 kB Download
md5:f66475779bd6f309c4806886164b9ebb
39.4 kB Preview Download
md5:1a041dcbf41abbcec87b32e99c0dc437
851.6 kB Download
md5:a7f1772ba102f7a03d006310b422cf78
22.9 kB Download
md5:afb6ed296446e31032255013dd5e4ee2
1.0 GB Download
md5:de4b204bf4db28c1c1b192313d6aeeb0
2.0 MB Preview Download
md5:3745978b5a2f474c86100fcb0d6d4854
6.8 MB Preview Download
md5:48b3219c73c73c8acff754d1e99d4fec
15.6 GB Preview Download
md5:675d54ec537ac0cd72bedc887765cee6
5.6 GB Preview Download

Additional details

Related works

Is documented by
Preprint: 10.48550/arXiv.2303.13435 (DOI)