Published December 31, 2022
| Version v2
Journal article
Open
Single-cell spatial landscapes of the lung tumour immune microenvironment
Creators
- Mark Sorin1
- Morteza Rezanejad2
- Elham Karimi3
- Benoit Fiset3
- Lysanne Desharnais1
- Lucas Perus4
- Simon Milette4
- Miranda Yu4
- Sarah M. Maritan3
- Samuel Dore1
- Emilie Pichette5
- William Enlow6
- Andréanne Gagné6
- Yuhong Wei3
- Michele Orain6
- Venkata SK. Manem7
- Roni Rayes3
- Peter M. Siegel8
- Sophie Camilleri-Broët9
- Pierre Olivier Fiset9
- Patrice Desmeules10
- Jonathan D. Spicer11
- Daniela F. Quail12
- Philippe Joubert13
- Logan A. Walsh1
- 1. Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, QC, Canada;Department of Human Genetics, McGill University, Montreal, QC, Canada
- 2. Departments of Psychology and Computer Science, University of Toronto, Toronto, ON, Canada
- 3. Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, QC, Canada
- 4. Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, QC, Canada;Department of Physiology, Faculty of Medicine, McGill University, Montreal, QC, Canada
- 5. Faculty of Medicine and Health Sciences, McGill University, Montreal, QC, Canada
- 6. Institut Universitaire de Cardiologie et de Pneumologie de Québec, Laval University, Québec City, QC, Canada
- 7. Institut Universitaire de Cardiologie et de Pneumologie de Québec, Laval University, Québec City, QC, Canada;Department of Mathematics & Computer Science, University of Quebec at Trois-Rivières, Trois-Rivières, QC, Canada
- 8. Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, QC, Canada;Department of Medicine, Division of Experimental Medicine, McGill University, Montreal, QC, Canada;Department of Biochemistry, Faculty of Medicine, McGill University, Montreal, QC, Canada
- 9. Department of Pathology, McGill University, Montreal, QC, Canada
- 10. Institut Universitaire de Cardiologie et de Pneumologie de Québec-Université Laval Research Centre, Québec City, QC, Canada
- 11. Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, QC, Canada;Department of Medicine, Division of Experimental Medicine, McGill University, Montreal, QC, Canada;Department of Surgery, McGill University Health Center, Montreal, QC, Canada
- 12. Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, QC, Canada;Department of Physiology, Faculty of Medicine, McGill University, Montreal, QC, Canada;Department of Medicine, Division of Experimental Medicine, McGill University, Montreal, QC, Canada
- 13. Institut Universitaire de Cardiologie et de Pneumologie de Québec, Laval University, Québec City, QC, Canada;Institut Universitaire de Cardiologie et de Pneumologie de Québec-Université Laval Research Centre, Québec City, QC, Canada
Description
All data supporting the findings of the publication "Single-cell spatial landscapes of the lung tumour immune microenvironment", including masks of high-dimension tif images, single-cell segmentation, single-cell cell types, and patient data. The code used to produce the results of this study is available at https://github.com/walsh-quail-labs/IMC-Lung.
We updated our data set, please use the new version (md5:e33079d5299cdc17f37b9f5e4c08be12).
Channel index names:
| Channel Name | Channel Index |
| CD117 | 1 |
| CD11c | 2 |
| CD14 | 3 |
| CD163 | 4 |
| CD16 | 5 |
| CD20 | 6 |
| CD31 | 7 |
| CD3 | 8 |
| CD4 | 9 |
| CD68 | 10 |
| CD8a | 11 |
| CD94 | 12 |
| DNA1 | 13 |
| FoxP3 | 14 |
| HLA-DR | 15 |
| MPO | 16 |
| Pancytokeratin | 17 |
| TTF1 | 18 |
Files
LungData.zip
Files
(2.1 GB)
| Name | Size | Download all |
|---|---|---|
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md5:e33079d5299cdc17f37b9f5e4c08be12
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