Dataset Open Access
De novo assembly of a long-read Amblyomma americanum genome
Thuy-Boun, Peter
Genome assemblies of Amblyomma americanum generated from PacBio HiFi sequencing of 50 individual female ticks. This repository contains the unphased diploid assembly generated by the Flye assembler (Arcadia_Amblyomma_americanum_asm001.fasta). In addition, there are two associated fasta files containing sequences generated by submitting the unphased diploid assembly to separation by the Purge_Dups pipeline (purged pseudo-haploid assembly and haplotig assembly).
Flye assembler: https://github.com/fenderglass/Flye
Purge_Dups pipeline: https://github.com/dfguan/purge_dups
NCBI Bioproject: PRJNA932813
Files
(12.7 GB)
| Name | Size | |
|---|---|---|
|
Arcadia_Amblyomma_americanum_asm001.fasta
md5:05bf8f66bf016010f006b0de3c7aede5 |
6.4 GB | Download |
|
Arcadia_Amblyomma_americanum_asm001_hap.fasta
md5:26bc29ca01aecf26e3e3d917f1f02f78 |
3.7 GB | Download |
|
Arcadia_Amblyomma_americanum_asm001_purged.fasta
md5:535fbac71d0dd7fda7b69b593321adf8 |
2.6 GB | Download |
|
Arcadia_Amblyomma_americanum_file_descriptions.txt
md5:536ba633bea4bd233a69d0c32a05eb25 |
646 Bytes | Download |
137
23
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 137 | 137 |
| Downloads | 23 | 23 |
| Data volume | 66.2 GB | 66.2 GB |
| Unique views | 103 | 103 |
| Unique downloads | 13 | 13 |
Indexed in
- Publication date:
- March 17, 2023
- DOI:
-
- Keyword(s):
- WGS whole genome sequencing Amblyomma americanum lone star tick ticks
- License (for files):
- Creative Commons Attribution 4.0 International