Representative sequences for colorectal cancer additive log ratios

Representative sequences and corresponding feature rank tables calculated in Debelius et al, The local tumor microbiome is associated with survival in late-stage colorectal cancer patients (doi:  https://doi.org/10.1101/2022.09.16.22279353)

file_s1_tissue_alr_sequences.fasta goes with tissue_only_ranks.tsv and corresponds to Figure 1 in the manuscript.

file_s2_interaction_dr_sequences.fasta corresponds to figure 2 and links to interaction_models_interaction_ranks.tsv and interaction_models_tissue_ranks.tsv

file_s3_tumor_rPCA_alr_sequences.fasta corresponds to Figure 3 and links to tumor_survival_index_ranks_file3.tsv.

The rank files provide the rank and rank group; the fasta files provide the reference sequences for the data.