Published February 27, 2023
| Version v1
Journal article
Restricted
Phylogenetic placement of Specklinia ordinata in Madisonia (Pleurothallidinae, Orchidaceae)
- 1. Institute of Botany of the Czech Academy of Sciences, Zámek 1, Průhonice, Czech Republic & Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, Prague, Czech Republic & Prague Botanical Garden, Trojská 800/196, Prague, Czech Republic & ponert@natur.cuni.cz; https://orcid.org/0000-0003-3827-8086
- 2. Institute of Botany of the Czech Academy of Sciences, Zámek 1, Průhonice, Czech Republic & pavel.travnicek@ibot.cas.cz; https://orcid.org/0000-0002-5806-1645
- 3. Institute of Botany of the Czech Academy of Sciences, Zámek 1, Průhonice, Czech Republic & zuza.chumova@gmail.com; https://orcid.org/0000-0002-6865-6183
Description
Ponert, Jan, Trávníček, Pavel, Chumová, Zuzana (2023): Phylogenetic placement of Specklinia ordinata in Madisonia (Pleurothallidinae, Orchidaceae). Phytotaxa 585 (2): 161-166, DOI: 10.11646/phytotaxa.585.2.7, URL: http://dx.doi.org/10.11646/phytotaxa.585.2.7
Files
Restricted
The record is publicly accessible, but files are restricted to users with access.
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:2108FF95F127FFD0FF85C561A956FFDE
- URL
- http://publication.plazi.org/id/2108FF95F127FFD0FF85C561A956FFDE
References
- Aiton, W.T. (1813) Hortus Kewensis, 2nd edition, volume 5. Longman, Hurst, Rees, Orme, and Brown, London, 568 pp.
- Barbosa Rodrigues, J. (1877) Genera et species orchidearum novarum, vol. 1. Fleiuss, Rio de Janeiro, 209 pp. https://doi.org/10.5962/bhl.title.585
- Bogarin, D., Perez-Escobar, O.A., Groenenberg, D., Holland, S.D., Karremans, A.P., Lemmon, E.M., Pupulin, F., Smets, E. & Grevendeel, B. (2018) Anchored hybrid enrichment generated nuclear, plastid and mitochondrial markers resolve the Lepanthes horrida (Orchidaceae: Pleurothallidinae) species complex. Molecular Phylogenetics and Evolution 129: 27-47. https://doi.org/10.1016/j.ympev.2018.07.014
- Braga, P.I.S. (1981) Orquideas das campinas da Amazonia brasileira - novas ocorrencias para o Brasil e taxa novas para a ciencia. Bradea 3: 170-173.
- Chumova, Z., Zaveska, E., Hlouskova, P., Ponert, J., Schmidt, P.-A., Certner, M., Mandakova, T. & Travnicek, P. (2021) Repeat proliferation and partial endoreplication jointly shape the patterns of genome size evolution in orchids. The Plant Journal 107: 511-524. https://doi.org/10.1111/tpj.15306
- Darriba, D., Taboada, G., Doallo, R. & Posada D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772. https://doi.org/10.1038/nmeth.2109
- Goldman, D.H., Freudenstein J.V., Kores, P.J., Molvray, M., Jarrell, D.C., Whitten, W.M., Cameron, K.M., Jansen, R.K. & Chase, M.W. (2001) Phylogenetics of Arethuseae (Orchidaceae) based on plastid matK and rbcL sequences. Systematic Botany 26: 670-695. https://doi.org/10.1043/0363-6445-26.3.670
- Hsiao, C., Chatterton, N., Asay, K. & Jensen, K. (1995) Molecular phylogeny of the Pooideae (Poaceae) based on nuclear rDNA (ITS) sequences. Theoretical and Applied Genetics 90: 389-398.
- Huelsenbeck, J.P. & Ronquist, F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755. https://doi.org/10.1093/bioinformatics/17.8.754
- Karremans, A.P. (2016) Genera pleurothallidinarum: an updated phylogenetic overview of Pleurothallidinae. Lankesteriana 16: 219- 241. https://doi.org/10.15517/lank.v16i2.26008
- Karremans, A.P., Albertazzi, F.J., Bakker, F.T., Bogarin, D., Eurlings, M.C.M., Pridgeon, A., Pupulin, F. & Gravendeel, B. (2016) Phylogenetic reassessment of Specklinia and its allied genera in the Pleurothallidinae (Orchidaceae). Phytotaxa 272 (1): 1-36. https://doi.org/10.11646/phytotaxa.272.1.1
- Karremans, A.P. & Vieira-Uribe, S. (2020) Pleurothallids: Neotropical jewels, vol. I. Mariscal, Quito, 311 pp.
- Katoh, K. & Standley, D.M. (2013) MAFFT Multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772-780. https://doi.org/10.1093/molbev/mst010
- Kozlov A. M., Darriba D., Flouri T., Morel B. & Stamatakis A. (2019) RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics 35: 4453-4455. https://doi.org/10.1093/bioinformatics/btz305
- Larsson, A (2014) AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30: 3276-3278. https://doi.org/10.1093/bioinformatics/btu531
- Lindley, J. (1830) The genera and species of orchidaceous plants, vol. 8. Asher, London, xvii, 554 pp.
- Lindley, J. (1859) Pleurothallis. Folia orchidacea, vol 1, part 9. Matthews, London, pp. 1-46.
- Liu, Z.J., Chen, L.J., Chen, S.C., Cai, J., Tsai, W.C., Hsiao, Y.Y., Rao, W.H., Ma, X.Y. & Zhang G.Q. (2011) Paraholcoglossum and Tsiorchis, two new orchid genera established by molecular and morphological analyses of the Holcoglossum alliance. PLoS ONE 6: e24864. https://doi.org/10.1371/journal.pone.0024864
- Luer, C.A. (1986) Icones pleurothallidinarum I. Systematics of the Pleurothallidinae. Monographs in Systematic Botany from the Missouri Botanical Garden 15: 1-81.
- Luer, C.A. (2004) Icones pleurothallidinarum XXVI. Pleurothallis subgenus Acianthera and three allied subgenera. A second century of new species of Stelis of Ecuador. Epibator, Ophidion, Zootrophion. Addenda to Brachionidium, Dracula, Lepanthes, Platystele, Pleurothallis, Porroglossum, and Masdevallia. New genera and combinations. Monographs in Systematic Botany from the Missouri Botanical Garden 95: 1-265.
- Luer, C.A. (2006) Icones pleurothallidinarum XXVIII. A reconsideration of Masdevallia, systematics of Specklinia and vegetatively similar taxa (Orchidaceae). Monographs in Systematic Botany from the Missouri Botanical Garden 105: 1-281.
- Luer, C.A. (2009) Icones pleurothallidinarum XXX: Lepanthes of Jamaica. Systematics of Stelis: Stelis of Ecuador, Part four. Addenda: Systematics of Masdevallia, New Species of Lepanthes from Ecuador, and miscellaneous new combinations. Monographs in Systematic Botany from the Missouri Botanical Garden 115: 1-265.
- Pfahl, J. (2013) The internet orchid species photo encyclopedia nomenclature notes December 16 2013. Internet Orchid Species Photo Encyclopedia Nomenclature Notes 2: 1. Available from: http://www.orchidspecies.com/nomenclature.htm (accessed 2 December 2023)
- Pridgeon, A.M. & Chase, M.W. (2001) A phylogenetic reclassification of Pleurothallidinae (Orchidaceae). Lindleyana 16: 235-271.
- Sang, T., Crawford, D.J. & Stuessy, T.F. (1997) Chloroplast DNA phylogeny, reticulate evolution and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84: 1120-1136. https://doi.org/10.2307/2446155
- Shaw, J., Lickey, E.B., Schilling, E.E. & Small, R.L. (2007) Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. American Journal of Botany 94: 275-288. https://doi.org/10.3732/ajb.94.3.275
- Smidt E.C., Toscano de Brito A.L.V., Maud A.V.S.R. & Morales N.G. (2021) An expanded concept of Madisonia including miscellaneous species of Pleurothallidinae (Orchidaceae): evidence from molecular analysis. Phytotaxa 505 (1): 71-84. https://doi.org/10.11646/phytotaxa.505.1.5
- Storchova, H., Hrdlickova, R., Chrtek, J., Tetera, M., Fitze, D. & Fehrer, J. (2000) An improved method of DNA isolation from plants collected in the field and conserved in saturated NaCl/CTAB solution. Taxon 49: 79-84. https://doi.org/10.2307/1223934
- Tate, J.A. (2002) Systematics and evolution of Tarasa Philippi (Malvaceae): an enigmatic Andean polyploid genus. PhD thesis. The University of Texas, Austin.
- Travnicek, P., Chumova, Z., Zaveska, E., Hanzlickova, J., Kupkova, L., Kucera, J., Gburova Stubnova, E., Rejlova, L., Mandakova, T. & Ponert, J. (2021) Integrative study of genotypic and phenotypic diversity in the Eurasian orchid genus Neotinea. Frontiers in Plant Sciences 12: 734240. https://doi.org/10.3389/fpls.2021.734240