Published February 13, 2023
| Version 1.0
Dataset
Open
Assemblies and alignment data generated for NAHRwhals manuscript.
Description
This repository contains 56 human assemblies used for a manuscript describing the NAHRwhals SV identifying tool (https://github.com/WHops/NAHRwhals). All underlying raw data as well as half of the assemblies are directly taken from the Human Genome Structural Variation Consortium (HGSVC). Raw HiFi reads underlying the assemblies can be obtained from: http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/.
Assemblies were created with in two batches. Batch one (HG00512, HG00513, HG00514, HG00731, HG00732, HG00733, HG02818, HG03125, HG03486, NA12878, NA19238, NA19239, NA19240, NA24385) was created by the HGSVC (Ebert et al. 2021) and used in the NAHRwhals manuscript. Batch two (GM19129, GM19434, HG00171, HG00864, HG02018, HG02282, HG02769, HG02953, HG03452, HG03520, NA12329, NA19036, NA19983, NA20847) is based on HGSVC raw data but was created specifically for the manuscript by Tobias Rausch.
For more information, please refer to the NAHRwhals paper "Impact and characterization of serial structural variations across humans and great apes" by Höps et al., 2024 for further details on assembly generation and intended usage.
Contact: wolfram.hoeps@gmail.com
Files
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