Published November 27, 2013
| Version v1
Software
Open
PanFunPro
- 1. Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
- 2. Center for Biologica Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; Comparative Genomics Group, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
Description
PanFunPro stands for PAN-genome analysis based on FUNctional PROfiles. PanFunPro is a tool for
pan-genome analysis. It has several following functionalities – (1) homology detection and genome
functional characterization by three HMM-collections, (2) pan-/core genome calculation within the
set of proteomes, (3) pairwise pan-/core-genome analysis, (4) specific genome calculation for different
subsets of genomes as well as pairwise analysis of specific proteomes, (5) basic statistics for
the output genes from the pan-/core-/specific-genome calculation, (6) analysis of available GO
information for the output genes from the pan-/core-/specific-genome calculation.
PanFunPro is provided in two parts: PanFunPro2profiles.pl and PanFunPro2apply.pl
Notes
Please be aware that this code is not being actively developed, as it is an archive of the code as it was at the time of publication in the associated F1000Research article. For the latest version of this code, please see http://www.cbs.dtu.dk/~oksana/PhD_Thesis/PanFunPro/.
Files
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Additional details
Related works
- Is cited by
- 10.12688/f1000research.2-265.v1 (DOI)