Published January 25, 2023
| Version v1
Dataset
Open
Pre-built Symphonypy reference objects that can be downloaded and used to map new query datasets
Description
Pre-built Symphonypy reference objects that can be downloaded and used to map new query datasets. The same data as in https://zenodo.org/record/5090425, but for Python port for Symphony.
The Symphony algorithm is used to perform reference mapping to these atlases.
- Paper: https://www.nature.com/articles/s41467-021-25957-x
- Usage: https://github.com/potulabe/symphonypy
References available for download:
- 10x PBMCs Atlas (pbmcs_10x_reference.h5ad)
- Pancreatic Islet Cells Atlas (pancreas_plate-based_reference.h5ad)
- Fetal Liver Hematopoiesis Atlas (fetal_liver_reference_3p.h5ad)
- Healthy Fetal Kidney Atlas (kidney_healthy_fetal_reference.h5ad)
- T cell CITE-seq atlas (tbru_ref.h5ad)
- Cross-tissue Inflammatory Immune Atlas (zhang_reference.h5ad)
- Tabula Muris Senis (FACS) Atlas (TMS_facs_reference.h5ad)
Files
Files
(1.3 GB)
| Name | Size | Download all |
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md5:d9a206201eca503d12424f937c76e709
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137.9 MB | Download |
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md5:f8c5c848091eb8d1429adc3858fcde13
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30.4 MB | Download |
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md5:e53c983b9b7986cd6cd81e6fc4927ebc
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7.2 MB | Download |
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md5:09e7490b8abb4c7ee65c0e32b8f2bd57
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24.0 MB | Download |
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md5:764dcb7e54e99563afe11f94564322bb
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585.1 MB | Download |
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md5:58ab806ec2a4ba33bdbd04994a74753e
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185.6 MB | Download |
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md5:18b97c0cd9cd8e25b68ac10cb00de83d
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378.7 MB | Download |