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Published January 25, 2023 | Version v1
Dataset Open

Pre-built Symphonypy reference objects that can be downloaded and used to map new query datasets

Authors/Creators

  • 1. Medical University of Vienna

Description

Pre-built Symphonypy reference objects that can be downloaded and used to map new query datasets. The same data as in https://zenodo.org/record/5090425, but for Python port for Symphony.

The Symphony algorithm is used to perform reference mapping to these atlases. 

References available for download:

  1. 10x PBMCs Atlas (pbmcs_10x_reference.h5ad)
  2. Pancreatic Islet Cells Atlas (pancreas_plate-based_reference.h5ad)
  3. Fetal Liver Hematopoiesis Atlas (fetal_liver_reference_3p.h5ad)
  4. Healthy Fetal Kidney Atlas (kidney_healthy_fetal_reference.h5ad)
  5. T cell CITE-seq atlas (tbru_ref.h5ad)
  6. Cross-tissue Inflammatory Immune Atlas (zhang_reference.h5ad)
  7. Tabula Muris Senis (FACS) Atlas (TMS_facs_reference.h5ad)

Files

Files (1.3 GB)

Name Size Download all
md5:d9a206201eca503d12424f937c76e709
137.9 MB Download
md5:f8c5c848091eb8d1429adc3858fcde13
30.4 MB Download
md5:e53c983b9b7986cd6cd81e6fc4927ebc
7.2 MB Download
md5:09e7490b8abb4c7ee65c0e32b8f2bd57
24.0 MB Download
md5:764dcb7e54e99563afe11f94564322bb
585.1 MB Download
md5:58ab806ec2a4ba33bdbd04994a74753e
185.6 MB Download
md5:18b97c0cd9cd8e25b68ac10cb00de83d
378.7 MB Download