Published February 5, 2023
| Version v4
Dataset
Open
Pre-built Symphonypy reference objects that can be downloaded and used to map new query datasets
Description
Pre-built Symphonypy reference objects that can be downloaded and used to map new query datasets. The same data as in https://zenodo.org/record/5090425, but for Python port for Symphony.
The Symphony algorithm is used to perform reference mapping to these atlases.
- Paper: https://www.nature.com/articles/s41467-021-25957-x
- Usage: https://github.com/potulabe/symphonypy
References available for download:
- 10x PBMCs Atlas (pbmcs_10x_reference.h5ad)
- Pancreatic Islet Cells Atlas (pancreas_plate-based_reference.h5ad)
- Fetal Liver Hematopoiesis Atlas (fetal_liver_reference_3p.h5ad)
- Healthy Fetal Kidney Atlas (kidney_healthy_fetal_reference.h5ad)
- T cell CITE-seq atlas (tbru_ref.h5ad)
- Cross-tissue Inflammatory Immune Atlas (zhang_reference.h5ad)
- Tabula Muris Senis (FACS) Atlas (TMS_facs_reference.h5ad)
Files
Files
(2.3 GB)
| Name | Size | Download all |
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md5:4a38d2916b2f7c27446409821372eef2
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228.7 MB | Download |
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md5:7c6499fd69bf44bc1eb9f38d3832a15f
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52.4 MB | Download |
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md5:04cab1d75e83ea3772d47b6bd1fddfcd
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12.2 MB | Download |
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md5:8d2e0e24890f16997dd990a681d454aa
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40.8 MB | Download |
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md5:73ec4b2aa0138f5d7ac896c2ba4c51b5
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851.4 MB | Download |
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md5:3b6a081b0dfabc84ca30dd6f78beee49
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457.7 MB | Download |
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md5:9c51262021d5017711e06d4c07c40b45
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624.3 MB | Download |