Published February 5, 2023 | Version v4
Dataset Open

Pre-built Symphonypy reference objects that can be downloaded and used to map new query datasets

Authors/Creators

  • 1. Medical University of Vienna

Description

Pre-built Symphonypy reference objects that can be downloaded and used to map new query datasets. The same data as in https://zenodo.org/record/5090425, but for Python port for Symphony.

The Symphony algorithm is used to perform reference mapping to these atlases. 

References available for download:

  1. 10x PBMCs Atlas (pbmcs_10x_reference.h5ad)
  2. Pancreatic Islet Cells Atlas (pancreas_plate-based_reference.h5ad)
  3. Fetal Liver Hematopoiesis Atlas (fetal_liver_reference_3p.h5ad)
  4. Healthy Fetal Kidney Atlas (kidney_healthy_fetal_reference.h5ad)
  5. T cell CITE-seq atlas (tbru_ref.h5ad)
  6. Cross-tissue Inflammatory Immune Atlas (zhang_reference.h5ad)
  7. Tabula Muris Senis (FACS) Atlas (TMS_facs_reference.h5ad)

Files

Files (2.3 GB)

Name Size Download all
md5:4a38d2916b2f7c27446409821372eef2
228.7 MB Download
md5:7c6499fd69bf44bc1eb9f38d3832a15f
52.4 MB Download
md5:04cab1d75e83ea3772d47b6bd1fddfcd
12.2 MB Download
md5:8d2e0e24890f16997dd990a681d454aa
40.8 MB Download
md5:73ec4b2aa0138f5d7ac896c2ba4c51b5
851.4 MB Download
md5:3b6a081b0dfabc84ca30dd6f78beee49
457.7 MB Download
md5:9c51262021d5017711e06d4c07c40b45
624.3 MB Download