Published December 9, 2021
| Version v3
Dataset
Open
Cancer-Associated Fibroblast Classification in Single-Cell and Spatial Proteomics Data
Creators
- 1. Department of Quantitative Biomedicine, University of Zurich, CH-8057 Zurich, Switzerland; Institute of Molecular Health Sciences, ETH Zurich, CH-8093 Zurich, Switzerland; Life Science Zurich Graduate School, ETH Zurich and University of Zurich, CH-8057 Zurich, Switzerland
- 2. 4) Patients' Tumor Bank of Hope (PATH), D-81337 Munich, Germany
- 3. 5) Pathology at Josefshaus, D-44137 Dortmund, Germany
- 4. 1) Department of Quantitative Biomedicine, University of Zurich, CH-8057 Zurich, Switzerland; nstitute of Molecular Health Sciences, ETH Zurich, CH-8093 Zurich, Switzerland
Description
ometiff: Imaging Data
Cell Masks: Masks generated with cellprofiler from ilastik segmentation training
cp-output_config: All relevant cellprofiler output and additional configuration files (for example clinical data) necessary to generate the single cell experiments.
IMC Data Objects: Single cell experiment RDS files.
scRNA-seq_dataobjects: .Rds files containing the clustered breast cancer, colon cancer, HNSCC, NSCLC and PDAC datasets as well as the integrated validation dataset.
Files
Cell Masks.zip
Files
(12.1 GB)
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md5:fccc9ae8d996fd350098ceebe58e29b4
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