Published January 9, 2023
| Version v1
Journal article
Open
Sharing GWAS summary statistics results in more citations - Extended search code
Creators
- 1. 1 Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, Cambridge, United Kingdom. 2 Department of Medicine, University of Cambridge, Cambridge, United Kingdom.
- 2. 1 Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, Cambridge, United Kingdom. 2 Department of Medicine, University of Cambridge, Cambridge, United Kingdom. 3 MRC Biostatistics Unit, University of Cambridge, Cambridge, United Kingdom.
Description
Data and code supporting "Sharing GWAS summary statistics results in more citations" - Extended search
This Zenodo repository contains the code used to identify publications that shared GWAS summary data outside of GWAS catalog, part of the analyses performed in Sharing GWAS summary statistics results in more citations paper, currently accepted at Communications Biology and available as a preprint on bioRxiv!
To run this code, do
rake retrieve_data # gets all the full text available
rake get_available # identifies papers with data available
For the rest of the code, see here for the Zenodo repository, or here for the GitHub repository.
Chris Wallace & Guillermo Reales
2023/01/09
Files
gwas-sharing-extended-search-zenodo-v1.zip
Files
(3.6 MB)
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md5:dd1fa6729d38c20aea5939d6b1e27aae
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Additional details
Funding
- Engineering genomic features to better understand the molecular basis of immune mediated diseases and their treatment 220788
- Wellcome Trust
- Statistical ‘omics approaches to understanding autoimmune diseases MC_UU_00002/4
- UK Research and Innovation
References
- Reales and Wallace (2021) Sharing GWAS summary statistics results in more citations: evidence from the GWAS catalog. BiorXiv. doi:10.1101/2022.09.27.509657