Published December 14, 2022 | Version 1.0
Software Open

CLM-Microbe v1.0

  • 1. San Diego State University

Description

This model version is considered the official release version. 1.0. It includes the updated codes on microbial C assimilation (Xu et al., 2014; He et al., 2021) and methane production and consumption (Xu et al., 2015; Wang et al., 2019).

Xu X., Schimel J. P., Thornton P. E., Song X., Yuan F.H., Goswami S., (2014) Substrate and environmental controls on microbial assimilation of soil organic carbon: a framework for Earth system models. Ecology Letters 17:547-555.

Xu X., Elias D. A., Graham D. E., Phelps T. J., Carrol S. L., Wullschleger S. D., Thornton P. E. (2015) A microbial functional group based module for simulating methane production and consumption: application to an incubation permafrost soil. Journal of Geophysical Research-Biogeosciences 120:1315-1333.

Wang Y., Yuan F.M., Yuan F.H., Gu B., Hahn M.S., Torn M.S., Ricciuto D.M., Kumar J., He L., Zona D., Lipson D.L., Wagner R., Oechel W.C., Wullschleger S.D., Thornton P.E., Xu X. (2019) Mechanistic Modeling of microtopographic impact on CH4 processes in an Alaskan tundra ecosystem using the CLM-Microbe model. Journal of Advances in Modeling Earth Systems 11:4228-4304.

He L., Lipson D.L., Rodrigues J.L., Mayes M.A., Bjork R.G., Glaser B., Thornton P.E., Xu X. (2021). Dynamics of Fungal and Bacterial Biomass Carbon in Natural Ecosystems: Site-level Applications of the CLM-Microbe Model. Journal of Advance in Modeling Earth Systems, DOI: 10.1029/2020MS002283. 

Notes

The codes run for the global run were checked on May 1st, but the updated code was pushed to GitHub in June.  It is the same as the code at GitHub: https://github.com/email-clm/CLM-Microbe/commit/3470e673957e4e3c3d730c5979a89d1448e9e4e4 The development of the model has been funded by U.S. Department of Energy and U.S. National Science Foundation.

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