comorment/containers: CoMorMent-Containers-v1.1

CoMorMent-Containers-v1.1

This is the first maintenance/feature release of the CoMorMent-Containers project. Confer also the CHANGELOG for an overview of changes since the initial v1.0.0 release

• Fixes incorrect --vcfField format by @rzetterberg in https://github.com/comorment/containers/pull/24
• Resolves #34 by @rzetterberg in https://github.com/comorment/containers/pull/35
• Split out mixer by @ofrei in https://github.com/comorment/containers/pull/53
• Add issue/PR templates by @espenhgn in https://github.com/comorment/containers/pull/48
• migrating files from GH/comorment/gwas@47a23f0 by @espenhgn in https://github.com/comorment/containers/pull/51
• Remove libquadmath0 from builds by @espenhgn in https://github.com/comorment/containers/pull/60
• Use Mambaforge for python3.sif builds by @espenhgn in https://github.com/comorment/containers/pull/63
• Revise Minimac4/bgenix installation in gwas.sif by @espenhgn in https://github.com/comorment/containers/pull/64
• Bump base image to Ubuntu:20.04 by @espenhgn in https://github.com/comorment/containers/pull/65
• Pin software versions by @espenhgn in https://github.com/comorment/containers/pull/66
• Basic test suite by @espenhgn in https://github.com/comorment/containers/pull/67
• Add Shapeit4 (and dependency HTSlib) to gwas.sif by @espenhgn in https://github.com/comorment/containers/pull/71
• GH actions (docker&python lint, greetings, stale) by @espenhgn in https://github.com/comorment/containers/pull/72
• add FaST-LMM v0.6.3 to python3.sif by @ofrei in https://github.com/comorment/containers/pull/74
• Remove broken links to MiXeR usage scenarios by @ofrei in https://github.com/comorment/containers/pull/82
• Add tests for metal, qctool ingwas.sif. by @espenhgn in https://github.com/comorment/containers/pull/84
• LD score regression moved to separate github repo by @ofrei in https://github.com/comorment/containers/pull/86
• Strip container builds of source files etc. by @espenhgn in https://github.com/comorment/containers/pull/79
• Remove ldsc.sif file by @ofrei in https://github.com/comorment/containers/pull/87
• clean up install of htslib, bcftools, shapeit4 by @espenhgn in https://github.com/comorment/containers/pull/89
• r.sif: add R bigsnpr and related tools for LDpred2 analysis by @espenhgn in https://github.com/comorment/containers/pull/91
• Add autogeneration of documentation using Sphinx by @espenhgn in https://github.com/comorment/containers/pull/88
• updated changelog for future v1.1 by @espenhgn in https://github.com/comorment/containers/pull/97
• Split out matlab by @ofrei in https://github.com/comorment/containers/pull/98
• Move MAGMA, LAVA, ldblock to comorment/magma repo by @ofrei in https://github.com/comorment/containers/pull/100
• Move out enigma-cnv.sif , ipsychcnv.sif, tryggve_query.sif by @ofrei in https://github.com/comorment/containers/pull/101
• some changelog/readme updates for v1.1 by @espenhgn in https://github.com/comorment/containers/pull/99

• @ofrei made their first contribution in https://github.com/comorment/containers/pull/53

Full Changelog: https://github.com/comorment/containers/compare/v1.0.0...v1.1