Journal article Open Access
CIMCR PD paper Nature Comm
Hall, Deborah; Keshavarzian, Ali; Voigt, Robin
Metagenomics pipeline used to analyze samples.
R script and necessary files for generating Centroid-Based nMDS plot figure.
R script and necessary files for generating Spearman Correlations.
Shell script to generate PERMANOVA results
R script to generate alpha-diversity results
Files
(456.2 kB)
| Name | Size | |
|---|---|---|
|
AlphaDiversity.R
md5:79b55240fc03878e837ac9ccfc866a33 |
6.6 kB | Download |
|
CentroidNMDS.R
md5:b30d7f1b260d937860493e634e9750da |
2.5 kB | Download |
|
config.yaml
md5:be82d3ceb752ce278f4ca9c5f3a7877a |
8.0 kB | Download |
|
Log2FC_Spearman_Copy.xlsx
md5:a287c79877fef281b8c7b20b6239859e |
24.9 kB | Download |
|
metadata.tsv
md5:8a697a98078b9e513d65ee942f58f42d |
1.7 kB | Download |
|
Metaphlan_Species_ColumnC.txt
md5:86ec6ac42d75715127af672489444f02 |
82.2 kB | Download |
|
Metaphlan_Species_ColumnD.txt
md5:d44bc3a4439e1e26d8c3bfa1de41d5a2 |
60.0 kB | Download |
|
Metaphlan_Species_ColumnE.txt
md5:decdab0680e934d70c852d6b774254fa |
56.0 kB | Download |
|
Metaphlan_Species_Permanova_ColumnC.csv
md5:ea5f1bf187cdc0ff6e6fa1dcc362d5a2 |
80.9 kB | Download |
|
Metaphlan_Species_Permanova_Env_ColumnC.csv
md5:b80aee1464912e650c812f0540b245a2 |
1.1 kB | Download |
|
Metaphlan_Species_Permanova_Multiplied.tsv
md5:ddf04653575de62ee32ae8144195a040 |
73.0 kB | Download |
|
Script.sh
md5:7268c42cda309f436b63c0e12f859d6d |
2.5 kB | Download |
|
Snakefile
md5:ad905052ed9fb87c44a5adc29bfdcea3 |
55.5 kB | Download |
|
SpearmanCorrelations.R
md5:66c047abf99caa4d3bcec1bb2e912f26 |
1.5 kB | Download |
107
101
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 107 | 53 |
| Downloads | 101 | 55 |
| Data volume | 4.8 MB | 3.0 MB |
| Unique views | 94 | 48 |
| Unique downloads | 67 | 36 |
Indexed in
- Publication date:
- May 1, 2022
- DOI:
-
- Keyword(s):
- Metagenomics Parkinson's Disease
- License (for files):
- Creative Commons Attribution 4.0 International