Flex-sweep: Singularity container and two pre-trained models
- 1. University of Arizona
- 2. Aarhus University
Description
Flex-sweep is a convolutional neural network (CNN) -based method of detecting selective sweeps. It is available at https://github.com/lauterbur/Flex-sweep, but is best run via a singularity container. This obviates the sometimes-tedious requirements of installing dependencies, except for the application to interface with the container itself, in this case singularity.
The singularity container to run Flex-sweep is provided here. In addition, pre-trained models are provided for some common use-cases. The CNN training process can be time consuming, so these models make using Flex-sweep faster if they are appropriate for the data set to be classified.
Files
pre-trained-models.zip
Files
(7.3 GB)
Name | Size | Download all |
---|---|---|
md5:a1980c7f09fd52813f31a8b8e2446262
|
5.4 GB | Download |
md5:ffd5ddb0a4c8b27208430e5806955902
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1.9 GB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/lauterbur/Flex-sweep (URL)