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Published October 26, 2022 | Version 4.0.3
Software Open

biobakery/MetaPhlAn: 4.0.3

Creators

  • 1. University of Trento
  • 2. Weill Cornell Medicine
  • 3. Okinawa Institute of Science and Technology
  • 4. INRA MetaGenoPolis
  • 5. University of Freiburg
  • 6. Edmund Mach Foundation

Description

Version 4.0.3 (Oct 24nd, 2022) Changed features

  • [MetaPhlAn] Removal of the NCBI taxID from the merged profiles produced by the merge_metaphlan_profiles.py script
  • [StrainPhlAn] Improved StrainPhlAn's performance in the markers/samples filtering step ### Fixes
  • [MetaPhlAn] -t rel_ab_w_read_stats now produces the reads stats also at the SGB level
  • [MetaPhlAn] Fixes overstimation of reads aligned to known clades
  • [MetaPhlAn] Fixes error when not providing the number of reads using SAM files as input
  • [StrainPhlAn] Fixes No markers were found for the clade error while executing StrainPhlAn without providing the clade markers FASTA file

Files

biobakery/MetaPhlAn-4.0.3.zip

Files (1.9 MB)

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md5:782a78d32974d23f197c3b29c5f46925
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Additional details

Related works

Is supplement to
https://github.com/biobakery/MetaPhlAn/tree/4.0.3 (URL)