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Phylogenetic relationships of Brachycera (Insecta: Diptera) inferred from mitochondrial genome sequences

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Song, Nan, Xi, Yu-Qiang, Yin, Xin-Ming (2022): Phylogenetic relationships of Brachycera (Insecta: Diptera) inferred from mitochondrial genome sequences. Zoological Journal of the Linnean Society 196 (2): 720-739, DOI: 10.1093/zoolinnean/zlab125, URL: https://academic.oup.com/zoolinnean/article/196/2/720/6544882

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urn:lsid:plazi.org:pub:9B6F91748935FFDEFFFB88515E657530

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Figure: 10.5281/zenodo.7184429 (DOI)
Figure: 10.5281/zenodo.7184431 (DOI)
Dataset: http://table.plazi.org/id/BB800892893DFFD6FF5888955CA575C7 (URL)
Figure: 10.5281/zenodo.7184433 (DOI)
Figure: 10.5281/zenodo.7184435 (DOI)
Dataset: http://table.plazi.org/id/BB800892893EFFD5FF6988955F3275C7 (URL)
Figure: 10.5281/zenodo.7184437 (DOI)

References

  • Abascal F, Zardoya R, Telford MJ. 2010. TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Research 38: W7-13.
  • Bayless KM, Trautwein MD, Meusemann K, Shin S, Petersen M, Donath A, Podsiadlowski L, Mayer C, Niehuis O, Peters RS, Meier R, Kutty SN, Liu S, Zhou X, Misof B, Yeates DK, Wiegmann BM. 2021. Beyond Drosophila: resolving the rapid radiation of schizophoran flies with phylotranscriptomics. BMC Biology 19: 1-17.
  • Beckenbach AT. 2011. Mitochondrial genome sequences of Nematocera (lower Diptera): evidence of rearrangement following a complete genome duplication in a winter crane fly. Genome Biology and Evolution 4: 89-101.
  • Bernt M, Bleidorn C, Braband A, Dambach J, Donath A, Fritzsch G, Golombek A, Hadrys H, Juhling F, Meusemann K. 2013. A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny. Molecular Phylogenetics and Evolution 69: 352-364.
  • Brake I. 2000. Phylogenetic systematics of the Milichiidae (Diptera, Schizophora). Insect Systematics and Evolution 57: 3-120.
  • Cameron SL, Lambkin CL, Barker SC, Whiting MF. 2007. A mitochondrial genome phylogeny of Diptera: whole genome sequence data accurately resolve relationships over broad timescales with high precision. Systematic Entomology 32: 40-59.
  • Cerretti P, Stireman III JO, Pape T, O'Hara JE, Marinho MA, Rognes K, Grimaldi DA. 2017. First fossil of an oestroid fly (Diptera: Calyptratae: Oestroidea) and the dating of oestroid divergences. PLoS One 12: e0182101.
  • Coiro M, Doyle JA, Hilton J. 2019. How deep is the conflict between molecular and fossil evidence on the age of angiosperms? New Phytologist 223: 83-99.
  • Collins KP , Wiegmann BM. 2002 a. Phylogenetic relationships and placement of the Empidoidea (Diptera: Brachycera) based on 28S rDNA and EF-1α sequences. Insect Systematics and Evolution 33: 421-444.
  • CollinsKP ,WiegmannBM. 2002b. Phylogeneticrelationships of the lower Cyclorrhapha (Diptera: Brachycera) based on 28S rDNA sequences. Insect Systematics and Evolution 33: 445-456.
  • Crampton-Platt A, Timmermans MJ, Gimmel ML, Kutty SN, Cockerill TD, Vun Khen C, Vogler AP. 2015. Soup to tree: the phylogeny of beetles inferred by mitochondrial metagenomics of a Bornean rainforest sample. Molecular Biology and Evolution 32: 2302-2316.
  • Cumming JM, Sinclair BJ, Wood DM. 1995. Homology and phylogenetic implications of male genitalia in Diptera- Eremoneura. Insect Systematics and Evolution 26: 120-151.
  • Czerny L, Strobl PG. 1909. Spanische Dipteren. III Beitrag. Verhandlungen der Zoologisch- Botanischen Gesellschaft in Wien 59: 121-301.
  • De Moya RS. 2019. Implications of a dating analysis of Hippoboscoidea (Diptera) for the origins of phoresis in feather lice (Psocodea: Phthiraptera: Philopteridae). Insect Systematics and Diversity 3: 1-5.
  • Ding S, Li X, Wang N, Cameron SL, Mao M, Wang Y, Xi Y, Yang D. 2015. The phylogeny and evolutionary timescale of Muscoidea (Diptera: Brachycera: Calyptratae) inferred from mitochondrial genomes. PLoS One 10: e0134170.
  • Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29: 1969-1973.
  • Gillett CP, Crampton-Platt A, Timmermans MJ, Jordal BH, Emerson BC, Vogler AP. 2014. Bulk de novo mitogenome assembly from pooled total DNA elucidates the phylogeny of weevils (Coleoptera: Curculionoidea). Molecular Biology and Evolution 31: 2223-2237.
  • Goremykin VV, Nikiforova SV, Bininda-Emonds OR. 2010. Automated removal of noisy data in phylogenomic analyses. Journal of Molecular Evolution 71: 319-331.
  • Greiner S , Lehwark P , Bock R . 2019 . OrganellarGenomeDRAW (OGDRAW) v.1.3. 1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Research 47: W59-W64.
  • Griffiths GCD. 1972. The phylogenetic classification of Diptera Cyclorrhapha with special reference to the structure of the male postabdomen. The Hague: Dr W. Junk, 340.
  • Griffiths GCD. 1984. Note on characterization of Eremoneura, Orthogenya and Cyclorrhapha. XVII International Congress of Entomology, Hamburg, August 1984. Hamburg, 1. Berlin [W. Ger.] : P. Parey.
  • Griffiths GCD. 1994. Relationships among the major subgroups of Brachycera (Diptera): a critical review. Canadian Entomologist 126: 861-880.
  • Griffiths GCD. 1996. Review of papers on the male genitalia of Diptera by D.M.Wood and associates. Studia Dipterologica 3: 107-123.
  • Grimaldi DA, Engel MS. 2005. Evolution of the insects. Cambridge: Cambridge University Press.
  • Hennig W. 1973. Diptera (Zweiflugler). Handbuch der Zoologie Berlin 4: 1-200.
  • Junqueira ACM , Lessinger AC , Torres TT , Rodrigues da SF , Vettore AL , Arruda P , Azeredo Espin AML. 2004. The mitochondrial genome of the blowfly Chrysomya chloropyga (Diptera: Calliphoridae). Gene 339: 7-15.
  • Junqueira ACM, Azeredo-Espin AML, Paulo DF, Marinho MAT, Tomsho LP, Drautz-Moses DI , Purbojati RW, Ratan A, Schuster SC. 2016. Large-scale mitogenomics enables insights into Schizophora (Diptera) radiation and population diversity. Scientific Reports 6: 21762.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software v.7: improvements in performance and usability. Molecular Biology and Evolution 30: 772-780.
  • Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT v.5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33: 511-518.
  • Krivosheina NP. 1990. Phyletic relations and evolution of the lower Brachycera (Diptera). Entomological Review 69: 138-150.
  • Krivosheina NP. 1991. Phylogeny of the lower Brachycera (Diptera), a new view. Acta Entomologica Bohemoslovaca 88: 81-93.
  • Krzeminski W, Krzeminska E. 2003. Triassic Diptera: descriptions, revisions and phylogenetic relations. Acta Zoologica Cracoviensia 46: 153-184.
  • Krzeminski W, Krzeminnska E, Papier F. 1994. Grauvogelia arzvilleriana sp. n. - the oldest Diptera species [Lower- Middle Triassic of France]. Acta Zoologica Cracoviensia 37: 95-99.
  • Kuck P, Meusemann K. 2010. FASconCAT: convenient handling of data matrices. Molecular Phylogenetics and Evolution 56: 1115-1118.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis v.7.0 for bigger datasets. Molecular Biology and Evolution 33: 1870-1874.
  • Kutty SN, Pape T, Pont A, Wiegmann BM, Meier R. 2008. The Muscoidea (Diptera: Calyptratae) are paraphyletic: evidence from four mitochondrial and four nuclear genes. Molecular Phylogenetics and Evolution 49: 639-652.
  • Kutty SN, Pape T, Wiegmann BM, Meier R. 2010. Molecular phylogeny of the Calyptratae (Diptera: Cyclorrhapha) with an emphasis on the superfamily Oestroidea and the position of Mystacinobiidae and McAlpine's fly. Systematic Entomology 35: 614-635.
  • Kutty SN, Meusemann K, Bayless KM, Marinho MAT, Pont AC, Zhou X, Misof B, Wiegmann BM, Yeates D, Cerretti P, Meier R, Pape T. 2019. Phylogenomic analysis of Calyptratae: resolving the phylogenetic relationships within a major radiation of Diptera. Cladistics 35: 605-622.
  • Lanfear R, Calcott B, Ho SY, Guindon S. 2012. Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29: 1695-1701.
  • Lartillot N, Rodrigue N, Stubbs D, Richer J. 2013. PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment. Systematic Biology 62: 611-615.
  • Liu Y, Song F, Jiang P, Wilson JJ, Cai W, Li H. 2018. Compositional heterogeneity in true bug mitochondrial phylogenomics. Molecular Phylogenetics and Evolution 18: 135-144.
  • Marinho MAT, Junqueira ACM, Paulo DF, Esposito MC, Villet MH, Azeredo-Espin AD. 2012 . Molecular phylogenetics of Oestroidea (Diptera: Calyptratae) with emphasis on Calliphoridae: insights into the inter-familial relationships and additional evidence for paraphyly among blowflies. Molecular Phylogenetics and Evolution 65: 840-854.
  • McAlpine JF. 1989. Phylogeny and classification of the Muscomorpha. Manual of Nearctic Diptera 3: 1397-1518.
  • Miller M, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gateway Comput. Environ. Workshop (GCE) 14: 1-8.
  • Minh BQ, Nguyen MT, von Haeseler A. 2013. Ultrafast approximation for phylogenetic bootstrap. Molecular Biology and Evolution 30: 1188-1195.
  • Misof B, Liu S, Meusemann K, Peters RS, Donath A, Mayer C, Frandsen PB, Ware J, Flouri T, Beutel RG, Niehuis O, Petersen M, Izquierdo-Carrasco F , Wappler T, Rust J, Aberer AJ, Aspock U, Aspock H, Bartel D, Blanke A, Berger S, Bohm A, Buckley TR, Calcott B, Chen J, Friedrich F, Fukui M, Fujita M, Greve C, Grobe P, Gu S, Huang Y, Jermiin LS, Kawahara AY, Krogmann L, Kubiak M, Lanfear R, Letsch H, Li Y, Li Z, Li J, Lu H, Machida R, Mashimo Y, Kapli P, McKenna DD, Meng G, Nakagaki Y, Navarrete- Heredia JL, Ott M, Ou Y, Pass G, Podsiadlowski L, Pohl H, von Reumont BM, Schutte K, Sekiya K, Shimizu S, Slipinski A, Stamatakis A, Song W, Su X, Szucsich NU, Tan M, Tan X, Tang M, Tang J, Timelthaler G, Tomizuka S, Trautwein M, Tong X, Uchifune T, Walzl MG, Wiegmann BM, Wilbrandt J, Wipfler B, Wong TK, Wu Q, Wu G, Xie Y, Yang S, Yang Q, Yeates DK, Yoshizawa K, Zhang Q, Zhang R, Zhang W, Zhang Y, Zhao J, Zhou C, Zhou L, Ziesmann T, Zou S, Li Y, Xu X, Zhang Y, Yang H, Wang J, Wang J, Kjer KM, et al. 2014. Phylogenomics resolves the timing and pattern of insect evolution. Science 346: 763-767.
  • Moulton JK, Wiegmann BM . 2004. Evolution and phylogenetic utility of CAD (rudimentary) among Mesozoicaged eremoneuran Diptera (Insecta). Molecular Phylogenetics and Evolution 31: 363-378.
  • NagatomiA. 1996. An essay on phylogeny of the orthorraphous Brachycera (Diptera). The Entomologist's Monthly Magazine 132: 95-148.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32: 268-274.
  • Nirmala X, Hypsa V, Zurovec M. 2001. Molecular phylogeny of Calyptratae (Diptera: Brachycera): the evolution of 18S and 16S ribosomal rDNAs in higher dipterans and their use in phylogenetic inference. Insect Molecular Biology 10: 475-485.
  • Oliveira MT, Barau JG, Junqueira ACM, Feijao PC, da Rosa AC, Abreu CF, Lessinger AC, AzeredoEspin AML. 2008. Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: the Muscidae (Diptera: Calyptratae) perspective. Molecular Phylogenetics and Evolution 48: 850-857.
  • Oosterbroek P, Courtney G. 1995. Phylogeny of the nematocerous families of Diptera (Insecta). Zoological Journal of the Linnean Society 115: 267-311.
  • Pape T. 1992. Phylogeny of the Tachinidae family-group (Diptera: Calyptratae). Tijdschrift voor Entomologie 135: 43-86.
  • Pape T, Blagoderov V, Mostovski MB. 2011. Order Diptera Linnaeus, 1758. Pp. 222-229. In: Zhang Z-Q, ed. Animal biodiversity: an outline of higher-level classification and survey of taxonomic richness. Zootaxa 3148: 1-237.
  • Patel RK, Jain M. 2012. NGS QC Toolkit: a toolkit for quality control of next-generation sequencing data. PLoS One 7: e30619.
  • Pauli T, Burt TO, Meusemann K, Bayless K, Donath A, Podsiadlowski L, Mayer C, Kozlov A, Vasilikopoulos A, Liu S, Zhou X, Yeates D, Misof B, Peters R, Mengual X. 2018. New data, same story: phylogenomics does not support Syrphoidea (Diptera: Syrphidae, Pipunculidae). Systematic Entomology 43: 447-459.
  • Peng Y, Leung HCM, Yiu SM, Chin FYL. 2012. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics 28: 1420-1428.
  • Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA. 2018. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology 67: 901-904.
  • Regier JC, Shultz JW, Ganley AR, Hussey A, Shi D, Ball B, Zwick A, Stajich JE, Cummings MP, Martin JW. 2008. Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Systematic Biology 57: 920-938.
  • Regier JC, Zwick A. 2011. Sources of signal in 62 proteincoding nuclear genes for higher-level phylogenetics of arthropods. PLoS One 6: e23408.
  • Regier JC, Mitter C, Zwick A, Bazinet AL, Cummings MP, Kawahara AY, Sohn J-C, Zwickl DJ, Cho S, Davis DR. 2013. A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies). PLOS One 8: e58568.
  • Rognes K. 1997. The Calliphoridae (blowflies) (Diptera. Oestroidea) are not a monophyletic group. Cladistics 13: 27-66.
  • Rota-Stabelli O, Kayal E, Gleeson D, Daub J, Boore JL, Telford MJ, Pisani D, Blaxter M, Lavrov DV. 2010. Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda. Genome Biology and Evolution 2: 425-440.
  • Schiner JR . 1862 . Vorlaufiger Commentar zum dipterologischen Theile der 'Fauna Austriaca'. Wiener Entomologische Monatsschrift 6: 428-436.
  • Sheffield NC, Song H, Cameron SL, Whiting MF. 2009. Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics. Systematic Biology 58: 381-394.
  • Shin S, Bayless KM, Winterton SL, Dikow T, Lessard BD, Yeates DK, Wiegmann B, Trautwein MD. 2018. Taxon sampling to address an ancient rapid radiation: a supermatrix phylogeny of early brachyceran flies (Diptera). Systematic Entomology 43: 277-289.
  • SinclairBJ. 1992. A phylogenetic interpretation of the Brachycera (Diptera) based on the larval mandible and associated mouthpart structures. Systematic Entomology 17: 233-252.
  • Sinclair BJ, Cumming JM. 2006. The morphology, higherlevel phylogeny and classification of the Empidoidea (Diptera). Zootaxa 1180: 1-172.
  • Sinclair BJ, Cumming JM, Wood DM. 1994. Homology and phylogenetic implications of male genitalia in Diptera lower Brachycera. Entomologica Scandinavica 24: 407-432.
  • Sinclair BJ, Borkent A, Wood DM. 2007. The male genital tract and aedeagal components of the Diptera with a discussion of their phylogenetic significance. Zoological Journal of the Linnean Society 150: 711-742.
  • Sinclair BJ, Cumming JM, Brooks SE. 2013. Male terminalia of Diptera (Insecta): a review of evolutionary trends, homology and phylogenetic implications. Insect Systematics and Evolution 44: 373-415.
  • Skevington JH, Yeates DK. 2000. Phylogeny of the Syrphoidea (Diptera) inferred from mtDNA sequences and morphology with particular reference to classification of the Pipunculidae (Diptera). Molecular Phylogenetics and Evolution 16: 212-224.
  • Smith SA, Beaulieu JM, Donoghue MJ. 2010. An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants. Proceedings of the National Academy of Sciences of the USA 107: 5897-5902.
  • Song ZK, Wang XZ, Liang GQ. 2008. Molecular evolution and phylogenetic utility of the internal transcribed spacer 2 (ITS2) in Calyptratae (Diptera: Brachycera). Journal of Molecular Evolution 67: 448-464.
  • Song N, Li H, Song F, Cai WZ. 2016. Molecular phylogeny of Polyneoptera (Insecta) inferred from expanded mitogenomic data. Scientific Reports 6: 36175.
  • Song N, Cai W, Li H. 2017. Deep-level phylogeny of Cicadomorpha inferred from mitochondrial genomes sequenced by NGS. Scientific Reports 7: 10429.
  • Song N, Zhang H, Zhao T. 2019. Insights into the phylogeny of Hemiptera from increased mitogenomic taxon sampling. Molecular Phylogenetics and Evolution 137: 236-249.
  • Stoffolano JG, Woodley NE, Borkent A, Yin L. 1988. Ultrastructural studies of the abdominal plaques of some Diptera. Annals of the Entomological Society of America 81: 503-510.
  • Stuckenberg BR. 1996. Antennal evolution in the Brachycera (Diptera), with a reassessment of terminology relating to the flagellum. Studia Dipterologica 6: 33-48.
  • Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (* and other methods), v.4.0 b10. Sunderland: Sinauer Associates.
  • Talavera G, Castresana J. 2007. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology 56: 564-577.
  • Tang P, Zhu JC, Zheng BY, Wei SJ, Sharkey M, Chen XX, Vogler AP. 2019. Mitochondrial phylogenomics of the Hymenoptera. Molecular Phylogenetics and Evolution 131: 8-18.
  • Timmermans M, Barton C, Haran J, Ahrens D, Culverwell CL, Ollikainen A, Dodsworth S, Foster PG, Bocak L, Vogler AP. 2016. Family-level sampling of mitochondrial genomes in Coleoptera: compositional heterogeneity and phylogenetics. Genome Biology and Evolution 8: 161-175.
  • Trautwein MD, Wiegmann BM, Yeates DK. 2010. A multigene phylogeny of the fly superfamily Asiloidea (Insecta): taxon sampling and additional genes reveal the sister-group to all higher flies (Cyclorrhapha). Molecular Phylogenetics and Evolution 56: 918-930.
  • Wiegmann BM, Shun-Chern T, Webb DW, Yeates DK, Cassel BK. 2000. Monophyly and relationships of the Tabanomorpha (Diptera: Brachycera) based on 28S ribosomal gene sequences. Annals of the Entomological Society of America 93: 1031-1038.
  • Wiegmann BM, Yeates DK, Thorne JL, Kishino H. 2003. Time flies, a new molecular time-scale for brachyceran fly evolution without a clock. Systematic Biology 52: 745-756.
  • Wiegmann BM, Trautwein MD, Winkler IS, Barr NB, Kim JW, Lambkin C, Bertone MA, Cassel BK , Bayless KM , Heimberg AM , Wheeler BM , Peterson KJ, Pape T, Sinclair BJ, Skevington JH, Blagoderov V, Caravas J, Kutty SN, Schmidt- Ott U, Kampmeier GE, Thompson FC, Grimaldi DA, Beckenbach AT, Courtney GW, Friedrich M, Meier R , Yeates DK. 2011. Episodic radiations in the fly tree of life. Proceedings of the National Academy of Sciences of the USA 108: 5690-5695.
  • Wheeler TA. 1994. Sister group relationships and the groundplan of the Chloropidae and Milichiidae. An unpublished paper read to the 3 rd International Congress of Dipterology. in Abstracts, 3rd International Congress of Dipterology, Guelph. 243 pp.
  • Woodley N. 1989. Phylogeny and classification of the 'Orthorrhaphous' Brachycera. In: McAlpine JF, ed. Manual of Nearctic Diptera, research branch agriculture monograph no. 32 3: 1371-1395. Hull: Canadian Government Publishing Centre.
  • Woodley NE, Borkent A, Wheeler TA. 2009. Phylogeny of Diptera [Chapter 5]. In: Brown BV, Borkent A , Cumming JM, Wood DM, Woodley NE, Zumbado M, eds. Manual of Central American Diptera. Ottawa: NRC Research Press, 79-94.
  • Xia XH. 2013. DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution. Molecular Biology and Evolution 30: 1720-1728.
  • Xia X, Xie Z, Salemi M, Chen L, Wang Y. 2003. An index of substitution saturation and its application. Molecluar Phylogenetics and Evolution 26: 1-7.
  • Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood . Molecular Biology and Evolution 24 : 1586-1591.
  • Yang Z, Nielsen R. 2000. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Molecular Biology and Evolution 17: 32-43.
  • Yeates DK. 1994. Cladistics and classification of the Bombyliidae (Diptera: Asiloidea). Bulletin of the American Museum of Natural History 219: 1-191.
  • Yeates DK. 2002. Relationships of extant lower Brachycera: a quantitative synthesis of morphological characters. Zoologica Scripta 31: 105-121.
  • Yeates DK, Wiegmann BM. 1999. Congruence and controversy: toward a higher-level phylogeny of Diptera. Annual Review of Entomology 44: 397-428.
  • Yeates DK, Wiegmann BM. 2005. Phylogeny and evolution of Diptera: recent insights and new perspectives. In Yeates DK, Wiegmann BM, eds. The evolutionary biology of flies. New York: Columbia University Press, 14-44.
  • Young AD, Lemmon AR, Skevington JH, Mengual X, Stahls G, Reemer M, Jordaens K, Kelso S, Lemmon EM, Hauser M, De Meyer M, Misof B, Wiegmann BM. 2016. Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae). BMC Evolutionary Biology 16: 143.
  • Zwick A, Regier JC, Zwickl DJ. 2012. Resolving discrepancy between nucleotides and amino acids in deep-level arthropod phylogenomics: differentiating serine codons in 21-aminoacid models. PLoS One 7: e47450.