Published October 7, 2022 | Version v1
Journal article Restricted

Mucor tofus, a new species isolated from Mao-tofu (a fermented soybean food) in China

  • 1. State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, People's Republic of China. & wangyn@im.ac.cn; https://orcid.org/0000-0001-8982-5604
  • 2. State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, People's Republic of China. & zhengry@im.ac.cn; https://orcid.org/0000-0002-0463-7012

Description

Wang, Ya-Ning, Zheng, Ru-Yong (2022): Mucor tofus, a new species isolated from Mao-tofu (a fermented soybean food) in China. Phytotaxa 567 (3): 233-244, DOI: 10.11646/phytotaxa.567.3.3, URL: http://dx.doi.org/10.11646/phytotaxa.567.3.3

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:6364203DFFD9FFC2FF81FFA0BC167270
URL
http://publication.plazi.org/id/6364203DFFD9FFC2FF81FFA0BC167270

References

  • Alfaro, M.E., Zoller, S. & Lutzoni, F. (2003) Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution 20 (2): 255-266. https://doi.org/10.1093/molbev/msg028
  • Alfred, H.W.P. (1917) A critical study of certain species of Mucor. Bulletin of the Torrey Botanical Club 44 (5): 241-259. https://doi.org/10.2307/2479439
  • Alvarez, E., Cano, J., Stchigel, A.M., Sutton, D.A., Fothergill, A.W., Salas, V., Rinaldi, M.G & Guarro, J. (2011) Two new species of Mucor from clinical samples. Medical Mycology 49 (1): 62-72. https://doi.org/10.3109/13693786.2010.499521
  • Alves, M.H., de Campos-Takaki, G.M., Okada, K., Pessoa, I.H.F. & Milanez, A.I. (2005) Detection of extracellular protease in Mucor species. Revista Iberoamericana de Micologia 22 (2): 114-117. https://doi.org/10.1016/s1130-1406(05)70020-6
  • Benny, G.L. (2008) The methods used by Dr. R.K. Benjamin, and other mycologists, to isolate Zygomycetes. Aliso 26: 37-61. https://doi.org/10.5642/aliso.20082601.08
  • Benny, G.L., Humber, R.A. & Voigt, K. (2014) Zygomycetous fungi: phylum Entomophthoromycota and subphyla Kickxellomycotina, Mortierellomycotina, Mucoromycotina, and Zoopagomycotina. In: McLaughlin, D.J. & Spatafora, J.W. (Eds.) The Mycota VII, part A. Systematics and Evolution. Springer Berlin Heidelberg, pp. 209-250. https://doi.org/10.1007/978-3-642-55318-9_8
  • Benucci, G.M.N., Wang, X.X., Zhang, L., Bonito, G. & Yu, F.Q. (2022) Yeast and lactic acid bacteria dominate the core microbiome of fermented 'hairy' tofu (Mao tofu). Diversity 14 (3): 207. https://doi.org/10.3390/d14030207
  • Dexter, Y. & Cooke, R.C. (1984) Temperature-determined growth and sporulation in the psychrophile Mucor strictus. Transactions of the British Mycological Society 83 (4): 561-568. https://doi.org/10.1016/S0007-1536(84)80175-8
  • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (4): 783-791. https://doi.org/10.2307/2408678
  • Fresenius, G. (1850) Beitrage zur Mykologie. Bei Heinrich Ludwig Bronner, Frankfurt A.M., pp. 1-38. https://doi.org/10.5962/bhl.title.51534
  • Goshadrou, A., Karimi, K. & Taherzadeh, M.J. (2011) Bioethanol production from sweet sorghum bagasse by Mucor hiemalis. Industrial Crops and Products 34 (1): 1219-1225. http://doi.org/10.1016/j.indcrop.2011.04.018
  • Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98. https://doi.org/10.1093/nar/25.24.4876
  • Han, B.Z., Rombouts, F.M. & Nout, M.J.R. (2001) A Chinese fermented soybean food. International Journal of Food Microbiology 65 (1-2): 1-10. https://doi.org/10.1016/s0168-1605(00)00523-7
  • Hermet, A., Meheust, D., Mounier, J., Barbier, G. & Jany, J.-L. (2012) Molecular systematics in the genus Mucor with special regards to species encountered in cheese. Fungal Biology 116 (6): 692-705. https://doi.org/10.1016/j.funbio.2012.04.002
  • Hesseltine, C.W. (1991) Zygomycetes in food fermentations. Mycologist 5 (4): 162-169. https://doi.org/10.1016/S0269-915X(09)80475-8
  • Hesseltine, C.W. (1992) Food fermentations: Mucorales in Ragi and related products. In: Leatham, G.F. (Ed.) Frontiers in industrial mycology. Springer, Boston, MA., pp. 24-39. https://doi.org/10.1007/978-1-4684-7112-0_2
  • Hoffmann, K., Pawlowska, J., Walther, G., Wrzosek, M., de Hoog, G.S., Benny, G.L., Kirk, P.M. & Voigt, K. (2013) The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies. Persoonia 30: 57-76. https://doi.org/10.3767/003158513x666259
  • Hong, S.-B., Kim, D.-H., Lee, M., Baek, S.-Y., Kwon, S.-W., Houbraken, J. & Samson, R.A. (2012) Zygomycota associated with traditional Meju, a fermented soybean starting material for soy sauce and soybean paste. Journal of Microbiology 50 (3): 386-393. https://doi.org/10.1007/s12275-012-1437-6
  • Hurdeal, V.G., Gentekaki, E., Hyde, K.D., Nguyen, T.T.T. & Lee, H.B. (2021) Novel Mucor species (Mucoromycetes, Mucoraceae) from northern Thailand. MycoKeys 84: 57-78. https://doi.org/10.3897/mycokeys.84.71530
  • James, T.Y., Kauff, F., Schoch, C.L., Matheny, P.B., Hofstetter, V., Cox, C.J., Celio, G., Gueidan, C., Fraker, E., Miadlikowska, J., Lumbsch, H.T., Rauhut, A., Reeb, V., Arnold, A.E., Amtoft, A., Stajich, J.E., Hosaka, K., Sung, G.H., Johnson, D., O'Rourke, B., Crockett, M., Binder, M., Curtis, J.M., Slot, J.C., Wang, Z., Wilson, A.W., Schussler, A., Longcore, J.E., O'Donnell, K., Mozley-Standridge, S., Porter, D., Letcher, P.M., Powell, M.J., Taylor, J.W., White, M.M., Griffith, G.W., Davies, D.R., Humber, R.A., Morton, J.B., Sugiyama, J., Rossman, A.Y., Rogers, J.D., Pfister, D.H., Hewitt, D., Hansen, K., Hambleton, S., Shoemaker, R.A., Kohlmeyer, J., Volkmann-Kohlmeyer, B., Spotts, R.A., Serdani, M., Crous, P.W., Hughes, K.W., Matsuura, K., Langer, E., Langer, G., Untereiner, W.A., Lucking, R., Budel, B., Geiser, D.M., Aptroot, A., Diederich, P., Schmitt, I., Schultz, M., Yahr, R., Hibbett, D.S., Lutzoni, F., McLaughlin, D.J., Spatafora, J.W. & Vilgalys, R. (2006) Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature 443 (7113): 818-822. https://doi.org/10.1038/nature05110
  • Jeong, W., Keighley, C., Wolfe, R., Lee, W.L., Slavin, M.A., Kong, D.C.M. & Chen, S.C.A. (2019) The epidemiology and clinical manifestations of mucormycosis: a systematic review and meta-analysis of case reports. Clinical Microbiology and Infection 25 (1): 26-34. https://doi.org/10.1016/j.cmi.2018.07.011
  • Karimi, K. & Zamani, A. (2013) Mucor indicus: biology and industrial application perspectives: a review. Biotechnology Advances 31 (4): 466-481. https://doi.org/10.1016/j.biotechadv.2013.01.009
  • Katoh, K. & Toh, H. (2008) Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics 9 (4): 286-298. https://doi.org/10.1093/bib/bbn013
  • Katoh, K., Kuma, K., Toh, H. & Miyata, T. (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33 (2): 511-518. https://doi.org/10.1093/nar/gki198
  • Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16 (2): 111-120. https://doi.org/10.1007/BF01731581
  • Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33 (7): 1870-1874. https://doi.org/10.1093/molbev/msw054
  • Kwon, J.-H. & Hong, S.-B. (2005) Soft rot of tomato caused by Mucor racemosus in Korea. Mycobiology 33 (4): 240-242. https://doi.org/10.4489/MYCO.2005.33.4.240
  • Li, G.J., Hyde, K.D., Zhao, R.L., Hongsanan, S., Abdel-Aziz, F.A., Abdel-Wahab, M.A., Alvarado, P., Alves-Silva, G., Ammirati, J.F., Ariyawansa, H.A., Baghela, A., Bahkali, A.H., Beug, M., Bhat, D.J., Bojantchev, D., Boonpratuang, T., Bulgakov, T.S., Erio, C., Boro, M.C., Ceska, O., Chakraborty, D., Chen, J.J., Chethana, K.W.T., Chomnunti, P., Consiglio, G., Cui, B.K., Dai, D.Q., Dai, Y.C., Daranagama, D.A., Das, K., Dayarathne, M.C., Crop, E.D., Oliveira, R.J.V.D., de Souza, A.F., de Souza, J.I., Dentinger, B.T.M., Dissanayake, A.J., Doilom, M., Drechsler-Santos, E.R., Ghobad-Nejhad, M., Gilmore, S.P., Goes-Neto, A., Gorczak, M., Haitjema, C.H., Hapuarachchi, K.K., Hashimoto, A., He, M.Q., Henske, J.K., Hirayama, K., Iribarren, M.J., Jayasiri, S.C., Jayawardena, R.S., Jeon, S.J., Jeronimo, G.H., Jesus, A.L., Jones, E.B.G., Kang, J.C., Karunarathna, S.C., Kirk, P.M., Konta, S., Kuhnert, E., Langer, E., Lee, H.S., Lee, H.B., Li, W.J., Li, X.H., Liimatainen, K., Lima, D.X., Lin, C.G., Liu, J.K., Liu, X.Z., Liu, Z.Y., Luangsa-Ard, J.J., Lucking, R., Lumbsch, H.T., Lumyong, S., Leano, E.M., Marano, A.V., Matsumura, M., McKenzie, E.H.C., Mongkolsamrit, S., Mortimer, P.E., Nguyen, T.T.T., Niskanen, T., Norphanphoun, C., O'Malley, M.A., Parnmen, S., Pawlowska, J., Perera, R.H., Phookamsak, R., Phukhamsakda, C., Pires-Zottarelli, C.L.A., Raspe, O., Reck, M.A., Rocha, S.C.O., de Santiago, A.L.C.M.A., Senanayake, I.C., Setti, L., Shang, Q.J., Singh, S.K., Sir, E.B., Solomon, K.V., Song, J., Srikitikulchai, P., Stadler, M., Suetrong, S., Takahashi, H., Takahashi, T., Tanaka, K., Tang, L.P., Thambugala, K.M., Thanakitpipattana, D., Theodorou, M.K., Thongbai, B., Thummarukcharoen, T., Tian, Q., Tibpromma, S., Verbeken, A., Vizzini, A., Vlasak, J., Voigt, K., Wanasinghe, D.N., Wang, Y., Weerakoon, G., Wen, H.A., Wen, T.C., Wijayawardene, N.N., Wongkanoun, S., Wrzosek, M., Xiao, Y.P., Xu, J.C., Yan, J.Y., Yang, J., Yang, S.D., Hu, Y., Zhang, J.F., Zhao, J., Zhou, L.W., Persoh, D., Phillips, A.J.L. & Maharachchikumbura, S.S.N. (2016) Fungal diversity notes 253-366: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 78 (1): 1-237. https://doi.org/10.1007/s13225-016-0366-9
  • Metin, B. (2018) Filamentous fungi in cheese production. Microbial Cultures and Enzymes in Dairy Technology: 257-275. https://doi.org/10.4018/978-1-5225-5363-2.ch01
  • Michailides, T.J. & Spotts, R.A. (1990) Postharvest diseases of pome and stone fruits caused by Mucor piriformis in the Pacific Northwest and California. Plant Disease 74 (8): 537-543. https://doi.org/10.1094/pd-74-0537
  • Morin-Sardin, S., Nodet, P., Coton, E. & Jany, J.-L. (2017) Mucor: a Janus-faced fungal genus with human health impact and industrial applications. Fungal Biology Reviews 31 (1): 12-32. https://doi.org/10.1016/j.fbr.2016.11.002
  • Nguyen, T.T. & Lee, H.B. (2020) Mucor cheongyangensis, a new species isolated from the surface of Lycorma delicatula in Korea. Phytotaxa 446 (1): 33-42. https://doi.org/10.11646/phytotaxa.446.1.4
  • Nguyen, T.T. & Lee, H.B. (2022) Discovery of three new Mucor species associated with cricket insects in Korea. Journal of Fungi 8 (6): 601. https://doi.org/10.3390/jof8060601
  • Nylander, J.A.A., Ronquist, F., Huelsenbeck, J.P. & Nieves-Aldrey, J.L. (2004) Bayesian phylogenetic analysis of combined data. Systematic Biology 53 (1): 47-67. https://doi.org/10.1080/10635150490264699
  • O'Donnell, K., Lutzoni, F.M., Ward, T.J. & Benny, G.L. (2001) Evolutionary relationships among mucoralean fungi (Zygomycota): evidence for family polyphyly on a large scale. Mycologia 93 (2): 286-297. https://doi.org/10.2307/3761650
  • Page, R.D.M. (1996) TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12 (4): 357-358. https://doi.org/10.1093/bioinformatics/12.4.357.
  • Park, J.H., Cho, S.E., Lee, S.H., Lee, C.K. & Shin, H.D. (2014) First report of postharvest rot of chestnuts caused by Mucor racemosus f. sphaerosporus in Korea. Plant Disease 98 (12): 1742-1742. https://doi.org/10.1094/PDIS-05-14-0547-PDN
  • Pidoplichko, N.M. & Mil'ko, A.A. (1971) Atlas of Mucoralean fungi. Academy of Sciences of the Ukrainian SSR, Kiev, Ukrainian SSR, 188 pp. (In Russian)
  • Prakash, H. & Chakrabarti, A. (2019) Global epidemiology of mucormycosis. Journal of Fungi 5 (1): 26. https://doi.org/10.3390/jof5010026
  • Ridgway, R. (1912) Color standards and color nomenclature. The author, United States, 268 pp.
  • Rodrigues Reis, C.E., Bento, H.B., Carvalho, A.K., Rajendran, A., Hu, B. & De Castro, H.F. (2019) Critical applications of Mucor circinelloides within a biorefinery context. Critical Reviews in Biotechnology 39 (4): 555-570. https://doi.org/10.1080/07388551.2019.1592104
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61 (3): 539-542. https://doi.org/10.1093/sysbio/sys029
  • Saito, S., Michailides, T.J. & Xiao, C.L. (2016) Mucor rot-an emerging postharvest disease of mandarin fruit caused by Mucor piriformis and other Mucor spp. in California. Plant Disease 100 (6): 1054-1063. https://doi.org/10.1094/pdis-10-15-1173-re
  • Schipper, M.A.A. (1967) Mucor strictus Hagem, a psychrophilic fungus, and Mucor falcatus sp.n. Antonie van Leeuwenhoek 33 (1): 189-195. https://doi.org/10.1007/BF02045550.
  • Schipper, M.A.A. (1973) A study on variability in Mucor hiemalis and related species. Studies in Mycology 4: 1-40.
  • Schipper, M.A.A. (1975) Mucor mucedo, Mucor flavus and related species. Studies in Mycology 10: 1-33.
  • Schipper, M.A.A. (1976) On Mucor circinelloides, Mucor racemosus and related species. Studies in Mycology 12: 1-40.
  • Schipper, M.A.A. (1978) On certain species of Mucor with a key to all accepted species. Studies in Mycology 17: 1-69.
  • Swofford, D.L. (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4b10. Sinauer Associates, Sunderland. https://doi.org/10.1111/j.0014-3820.2002.tb00191.x
  • Vandepol, N., Liber, J., Desiro, A., Na, H., Kennedy, M., Barry, K., Grigoriev, I.V., Miller, A.N., O'Donnell, K., Stajich, J.E. & Bonito, G. (2020) Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics. Fungal Diversity 104 (1): 267-289. https://doi.org/10.1007/s13225-020-00455-5
  • Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172 (8): 4238-4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  • Voigt, K. & Wostemeyer, J. (2001) Phylogeny and origin of 82 zygomycetes from all 54 genera of the Mucorales and Mortierellales based on combined analysis of actin and translation elongation factor EF-1α genes. Gene 270 (1-2): 113-120. https://doi.org/10.1016/S0378-1119(01)00464-4
  • Voigt, K., James, T.Y., Kirk, P.M., Santiago, A.L., Waldman, B., Griffith, G.W., Fu, M., Radek, R., Strassert, J.F. & Wurzbacher, C. (2021) Early-diverging fungal phyla: taxonomy, species concept, ecology, distribution, anthropogenic impact, and novel phylogenetic proposals. Fungal Diversity 109 (1): 59-98. https://doi.org/10.1007/s13225-021-00480-y
  • Wagner, L., Stielow, J.B., de Hoog, G.S., Bensch, K., Schwartze, V.U., Voigt, K., Alastruey-Izquierdo, A., Kurzai, O. & Walther, G. (2020) A new species concept for the clinically relevant Mucor circinelloides complex. Persoonia 44: 67-97. https://doi.org/10.3767/persoonia.2020.44.03
  • Walther, G., Pawlowska, J., Alastruey-Izquierdo, A., Wrzosek, M., Rodriguez-Tudela, J.L., Dolatabadi, S., Chakrabarti, A. & de Hoog, G.S. (2013) DNA barcoding in Mucorales: an inventory of biodiversity. Persoonia 30: 11-47. https://doi.org/10.3767/003158513x665070
  • Walther, G., Wagner, L. & Kurzai, O. (2019) Updates on the taxonomy of Mucorales with an emphasis on clinically important taxa. Journal of Fungi 5 (4): 106. https://doi.org/10.3390/jof5040106
  • Wang, C.L., Shi, D.J. & Gong, G.L. (2008) Microorganisms in Daqu: a starter culture of Chinese Maotai-flavor liquor. World Journal of Microbiology & Biotechnology 24 (10): 2183-2190. https://doi.org/10.1007/s11274-008-9728-0
  • Wang, Y.-N., Liu, X.-Y. & Zheng, R.-Y. (2014) Umbelopsis changbaiensis sp. nov. from China and the typification of Mortierella vinacea. Mycological Progress 13: 657-669. https://doi.org/10.1007/s11557-013-0948-9
  • White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR protocols: a guide to methods and applications. Academic Press, New York, pp. 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  • Yamaguchi, S., Okubo, Y., Katano, A., Sano, A., Uezato, H. & Takahashi, K. (2015) Primary cutaneous mucormycosis caused by Mucor irregularis in an elderly person. Journal of Dermatology 42 (2): 210-214. https://doi.org/10.1111/1346-8138.12736
  • Zhao, X.H. & Zheng, X.T. (2009) A primary study on texture modification and proteolysis of mao-tofu during fermentation. African Journal of Biotechnology 8 (10): 2294-2300. https://doi.org/10.4314/AJB.V8I10.60576
  • Zheng, R.-Y., Chen, G.-Q., Huang, H. & Liu, X.-Y. (2007) A monograph of Rhizopus. Sydowia 59 (2): 273-372.