Dataset Open Access
mOTUs3 - genome metadata
Ruscheweyh, Hans-Joachim;
Milanese, Alessio;
Mende, Daniel;
Paoli, Lucas;
Zeller, Georg;
Sunagawa, Shinichi
A tab-delimited file listing genomes used in mOTUs3 with metadata that map each genome to a mOTU and provide additional information such as: the data source, quality metrics and download links. Genome sequence files can be programmatically downloaded with a tool available at: https://github.com/motu-tool/motus_v3_genomes.
GENOME Genome name
MOTU Assigned mOTU
GENOME_SOURCE progenomes2.0 or extension
MGS_ADDED Were MGs from this genome added to the database?
CHECKM_COMPLETENESS CheckM v1 completeness score
CHECKM_CONTAMINATION CheckM v1 contamination score
GUNC_PROGENOMES2.1 GUNC result using the progenomes 2.1 database
ANVIO_COMPLETENES ANVIO v7.1 completeness score
ANVIO_CONTAMINATION ANVIO v7.1 contamination score
GTDB-R207 GTDB classification using the database release R207
ENVIRONMENT Source environment of genomes. Retrieved either from progenomes2.0 or from the associated biosample description
DOWNLOAD_LINK Link to file containing genomes (one file per mOTU)
DOWNLOAD_MD5 MD5 sum of the file
ORIGINAL_DOWNLOAD_LINK Link to original genome if available
Files
(14.9 MB)
| Name | Size | |
|---|---|---|
|
mOTUs3.genome_metadata.tsv.gz
md5:4a39aa6437b7103ace22aadce2e169ed |
14.9 MB | Download |
265
145
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downloads
| All versions | This version | |
|---|---|---|
| Views | 265 | 215 |
| Downloads | 145 | 69 |
| Data volume | 1.3 GB | 1.0 GB |
| Unique views | 218 | 185 |
| Unique downloads | 95 | 56 |
Indexed in
- Publication date:
- August 8, 2022
- DOI:
-
- Communities:
- License (for files):
- Creative Commons Attribution 4.0 International