Dataset Open Access
scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files
Peidli, Stefan;
Green, Tessa D.;
Shen, Ciyue;
Gross, Torsten;
Min, Joseph;
Taylor-King, Jake P.;
Marks, Debora S.;
Luna, Augustin;
Blüthgen, Nils;
Sander, Chris
Secondary upload of datasets on scPerturb.org
h5ad files for RNA and protein datasets, created using scanpy 1.9.1
Files
(26.9 GB)
| Name | Size | |
|---|---|---|
|
AdamsonWeissman2016_GSM2406675_10X001.h5ad
md5:232f7e3756d41602bbe434b50662a76f |
34.6 MB | Download |
|
AdamsonWeissman2016_GSM2406677_10X005.h5ad
md5:8657391920e7f8b3e6fd52745777002a |
139.1 MB | Download |
|
AdamsonWeissman2016_GSM2406681_10X010.h5ad
md5:2fa44ea61a8dd35742af618638ec65fc |
471.3 MB | Download |
|
AissaBenevolenskaya2021.h5ad
md5:c1ee47cc82052c1eed78f3a2e3eea30c |
45.9 MB | Download |
|
ChangYe2021.h5ad
md5:9c68660b093ebb3611d114893766fc97 |
501.8 MB | Download |
|
DatlingerBock2017.h5ad
md5:c797d8e0320afcc0cc2a94e94805b142 |
39.1 MB | Download |
|
DatlingerBock2021.h5ad
md5:5cfbcb4770e9c859a07b2cc44fd12066 |
33.6 MB | Download |
|
DixitRegev2016.h5ad
md5:2c2a889ef63100eb44e2e0d43d691ddc |
309.3 MB | Download |
|
FrangiehIzar2021_protein.h5ad
md5:9d9337e30af69ffdcf5e831f96616ed1 |
24.7 MB | Download |
|
FrangiehIzar2021_RNA.h5ad
md5:dc438f53c476a3dd562898654d48ed15 |
1.5 GB | Download |
|
GasperiniShendure2019_atscale.h5ad
md5:874e029adb1a344bd5ff313179084ad5 |
1.9 GB | Download |
|
GasperiniShendure2019_highMOI.h5ad
md5:04e1af7562c1d0d2dd2f9d1cf01e3560 |
418.3 MB | Download |
|
GasperiniShendure2019_lowMOI.h5ad
md5:f26552257c5ce060ce523e5ffcb301a5 |
322.7 MB | Download |
|
GehringPachter2019.h5ad
md5:1106ec930d06a4342bd04f45cd75fca6 |
73.3 MB | Download |
|
McFarlandTsherniak2020.h5ad
md5:03204a96b7b5dd96fc3cf33418222cd9 |
1.5 GB | Download |
|
NormanWeissman2019_filtered.h5ad
md5:c870e6967d91c017d9da827bab183cd6 |
698.7 MB | Download |
|
PapalexiSatija2021_eccite_arrayed_protein.h5ad
md5:5e4346855f70c7ae90da9eb75ea12414 |
550.9 kB | Download |
|
PapalexiSatija2021_eccite_arrayed_RNA.h5ad
md5:843820d48b024348d6132cd53be0da91 |
52.3 MB | Download |
|
PapalexiSatija2021_eccite_protein.h5ad
md5:07290242b0e835c9474bb816de9cda45 |
1.2 MB | Download |
|
PapalexiSatija2021_eccite_RNA.h5ad
md5:d9e8bfe20b0e7b0919be042e8fcf6d03 |
147.2 MB | Download |
|
ReplogleWeissman2022_K562_essential.h5ad
md5:d8cba17576d1a8afc0f7d71b79cad0f7 |
1.5 GB | Download |
|
ReplogleWeissman2022_K562_gwps.h5ad
md5:13db594f8f1d2ccb88fec44a13e414dc |
8.8 GB | Download |
|
ReplogleWeissman2022_rpe1.h5ad
md5:cc7f1ec50aeb3a3e1b4a6cfa713d80fa |
1.2 GB | Download |
|
SchiebingerLander2019_GSE106340.h5ad
md5:8d988c345930195ea6e64a05c762abb3 |
378.9 MB | Download |
|
SchiebingerLander2019_GSE115943.h5ad
md5:ee695cd9e437cd27681b74b867adc994 |
1.6 GB | Download |
|
SchraivogelSteinmetz2020_TAP_SCREEN__chromosome_11_screen.h5ad
md5:f3276b2ee09bc132fa7f471090b9094e |
21.8 MB | Download |
|
SchraivogelSteinmetz2020_TAP_SCREEN__chromosome_8_screen.h5ad
md5:916e6b511e164f840c7835291f2bbd51 |
21.0 MB | Download |
|
ShifrutMarson2018.h5ad
md5:2b62813f781a85c4d9649bf36ce36b19 |
253.8 MB | Download |
|
SrivatsanTrapnell2020_sciplex2.h5ad
md5:12a48293a166a859f994551653a2ad8c |
145.2 MB | Download |
|
SrivatsanTrapnell2020_sciplex3.h5ad
md5:d1f51b9f8de35ca07638132539da9a99 |
2.5 GB | Download |
|
SrivatsanTrapnell2020_sciplex4.h5ad
md5:9335b581baba2df02ecf92eed4b56ad7 |
253.3 MB | Download |
|
TianKampmann2019_day7neuron.h5ad
md5:74074e99e8e7c5a6297b6a684b72d754 |
268.9 MB | Download |
|
TianKampmann2019_iPSC.h5ad
md5:8279484264b513fd0419dacdc639ecef |
350.8 MB | Download |
|
TianKampmann2021_CRISPRa.h5ad
md5:67a9b324ce46b74a8ca09370de45ded6 |
154.8 MB | Download |
|
TianKampmann2021_CRISPRi.h5ad
md5:70d260cf5587fc09d759b9f3e32785c6 |
289.4 MB | Download |
|
WeinrebKlein2020.h5ad
md5:5fbde4a188969399b18b5cd675807be4 |
228.5 MB | Download |
|
XieHon2017.h5ad
md5:e01981371cf726f3c7281aaf97500a90 |
117.4 MB | Download |
|
ZhaoSims2021.h5ad
md5:2034fe859694fb5458a35cc37a8753c5 |
586.9 MB | Download |
1,119
2,255
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 1,119 | 1,007 |
| Downloads | 2,255 | 1,934 |
| Data volume | 2.1 TB | 1.9 TB |
| Unique views | 910 | 852 |
| Unique downloads | 542 | 441 |
Indexed in
- Publication date:
- August 22, 2022
- DOI:
-
- Keyword(s):
- Single-cell RNA-seq ATAC-seq Perturbation
- Related identifiers:
- Published in
- 10.1101/2022.08.20.504663 (Preprint)
- License (for files):
- Creative Commons Attribution 4.0 International