PheKnowLator Human Disease Knowledge Graphs -- Build Archive

RELEASE V3.0.2 KNOWLEDGE GRAPH BENCHMARK ARCHIVE

Website: https://github.com/callahantiff/PheKnowLator/wiki/Benchmarks-and-Builds

The goal of this PheKnowLator benchmark is to provide knowledge graph builds that represent human disease mechanisms, including the central dogma.

Google Cloud Storage Bucket Access:

• https://console.cloud.google.com/storage/browser/pheknowlator

Build Data:

Google Cloud Storage

• Original Data
• Processed Data

Zenodo

• Original Data
• Processed Data

Knowledge Graph Data:

v1.0.0

Google Cloud Storage

• https://console.cloud.google.com/storage/browser/pheknowlator/archived_builds/release_v1.0.0

Zenodo

• 10.5281/zenodo.7030200

All Other Versions

Google Cloud Storage

• Class-based Builds
• Instance-Based Builds

Zenodo

• Class-based Knowledge Model + Standard Relations
  • OWL
  • OWL-NETS
• Class-based Knowledge Model + Inverse Relations
  • OWL
  • OWL-NETS
• Instance-based Knowledge Model + Standard Relations
  • OWL
  • OWL-NETS
• Instance-based Knowledge Model + Inverse Relations
  • OWL
  • OWL-NETS

Knowledge Graph Embeddings:

Google Cloud Storage

• v1.0.0_03SEP2019

Zenodo: 

• v1.0.0_03SEP2019