Published August 27, 2022 | Version v1
Journal article Open

Global patterns in endemicity and vulnerability of soil fungi - superecoregions and endemicity

Creators

  • 1. Center of Mycology and Microbiology, University of Tartu, Tartu, Estonia
  • 2. Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
  • 3. Department of Biology, Philipps-University, Marburg, Germany
  • 4. Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
  • 5. Department of Mycology and Plant Resistance, School of Biology, V.N. Karazin Kharkiv National University, Kharkiv, Ukraine
  • 6. Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Sevilla, Spain
  • 7. Instituto Multidisciplinar para el Estudio del Medio 'Ramón Margalef' and Departamento de Ecología, Universidad de Alicante; 03690, Alicante, Spain
  • 8. Institute of Botany, University of the Punjab, Lahore, Pakistan
  • 9. Centro de Investigaciones en Microbiología y Biotecnología- UR (CIMBIUR), Universidad del Rosario, Bogotá, Colombia
  • 10. Institute of Forestry and Engineering, Estonian University of Life Sciences, Tartu, Estonia
  • 11. Escuela de Microbiologia, Universidad de Antioquia, Medellin, Antioquia, Colombia
  • 12. Department of Agricultural, Food and Forest Sciences, University of Palermo, Palermo, Italy.
  • 13. Department of Biomedical Sciences, University of Cagliari, Cagliari, Italy
  • 14. Department Biology, Ghent University, Ghent, Belgium
  • 15. Department of Biomedicine, Indonesia International Institute for Life Sciences, Jakarta, Indonesia
  • 16. Department of Crop Science, University of Dschang, Dschang, Cameroon
  • 17. Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden
  • 18. Departamento de Zootecnia, Universidade Federal do Paraná, Curitiba, PR, Brazil
  • 19. Department of Biological Sciences and Biotechnology, Botswana International University of Science and Technology, Palapye, Botswana
  • 20. Natural History Museum of Zimbabwe, Bulawayo, Zimbabwe
  • 21. Centro de Investigación e Innovación para el Cambio Climático (CiiCC), Universidad SantoTomás, Santiago, Chile
  • 22. Latvian State Forest Research Insitute Silava, Salaspils, Latvia
  • 23. Department of Botany, Jawaharlal Nehru Rajkeeya Mahavidyalaya, Pondicherry University, Port Blair, India
  • 24. College of Biological Resource and Food Engineering, Qujing Normal University, Qujing,Yunnan, China
  • 25. Instituto Multidisciplinario de Biología Vegetal (CONICET), Universidad Nacional de Córdoba, Cordoba, Argentina
  • 26. Natural History Museum of Denmark, Copenhagen, Denmark
  • 27. Department of Environmental Science, Saint Mary's University, Halifax, Nova Scotia, Canada
  • 28. Altai State University, Barnaul, Russia
  • 29. CSIRO Land and Water, Wembley, WA, Australia
  • 30. Department of Natural Sciences, Manchester Metropolitan University, Manchester, UK
  • 31. Helmholtz Zentrum München, Neuherberg, Germany
  • 32. Utah Valley University, Orem UT, USA
  • 33. Plant, Soil and Microbial Sciences, Michigan State University, East Lansing MI, USA
  • 34. Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
  • 35. Faculty of Natural and Environmental Sciences, Agricultural University of Iceland, Hvanneyri, Iceland
  • 36. Center for Macroecology, Evolution and Climate, University of Copenhagen, Copenhagen, Denmark
  • 37. Department of Silviculture and Ecology, Institute of Forestry of Lithuanian Research Centre for Agriculture and Forestry (LAMMC). Girionys, Lithuania.
  • 38. Plant Ecology and Nature Conservation, Wageningen University & Research, Wageningen, The Netherlands
  • 39. ELKH-EKKE Lendület Environmental Microbiome Research Group, Eszterházy Károly Catholic University, Eger, Hungary
  • 40. Environmental Science Center, Qatar University, Doha, Qatar
  • 41. Biology Department, Stanford University, Stanford CA, USA
  • 42. Department of Arctic and Marine Biology, The Arctic University of Norway, Tromsø, Norway
  • 43. Research Unit Tropical Mycology and Plants-Soil Fungi Interactions, University of Parakou, Parakou, Benin
  • 44. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
  • 45. NERC British Antarctic Survey, High Cross, Cambridge, UK
  • 46. Chair of Hydrobiology and Fishery, Estonian University of Life Sciences, Tartu, Estonia
  • 47. Department of Plant Biology, University of Ilorin, Ilorin, Nigeria
  • 48. Gothenburg Centre for Sustainable Development, Gothenburg, Sweden
  • 49. Department of Biology, Syracuse University, Syracuse, NY, USA; and Department of Environmental and Forest Biology,State University of New York College of Environmental Science and Forestry, Syracuse, NY, USA.
  • 50. Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
  • 51. Department of Genetics, University of the Free State, Bloemfontein, South Africa
  • 52. Department of Environment, Ghent University, Ghent, Belgium
  • 53. Mycology Working Group, Goethe University Frankfurt am Main, Frankfurt am Main, Germany
  • 54. College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan, China
  • 55. Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
  • 56. Center For Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
  • 57. Freie Universität Berlin, Institut für Biologie, Berlin, Germany
  • 58. Institute of Microbiology, Czech Academy of Sciences, Prague, Czech Republic
  • 59. Gothenburg Global Biodiversity Centre, University of Gothenburg, Gothenburg, Sweden
  • 60. Instituto de Biología, Universidad Nacional Autónoma de México, Ciudad de México, México
  • 61. Instituto Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia, Chile.
  • 62. College of Science, King Saud University, Riyadh, Saudi Arabia.
  • 63. Department of Ecology and Plant Geography, Moscow Lomonosov State University, Moscow, Russia
  • 64. College of Science, United Arab Emirates University, Abu Dhabi, UAE
  • 65. Department of Biological Sciences, California State Polytechnic University, Humboldt, Arcata CA, USA
  • 66. Department of Food Science and Technology, University of Burundi, Bujumbura, Burundi.
  • 67. School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, Korea
  • 68. Centre for Environmental Sciences, Hasselt University, Hasselt, Belgium
  • 69. Royal Botanic Gardens, Kew, Richmond, United Kingdom
  • 70. University of Tartu Natural History Museum, Tartu, Estonia

Description

This repository contains additional data associated to Tedersoo et al. (2022) (https://doi.org/10.1111/gcb.16398).This repository  contains those data necessary to rerun the superecoregion design and the endemicity analyses  as well as vector maps on the endemicity and OTU richness of individual superecoregions. Further data associated with the same publication, regarding the vulnerability analysis, can be found here: 10.5281/zenodo.6983158.

  1. input.zip - Input data needed to run the analysis scripts provided [here](https://github.com/Mycology-Microbiology-Center/Fungal_Endemicity_and_Vulnerability/superecoregions_and_endemicity). The entire folder is to be copied in the working directory to run the pipeline.
  2. output.zip - Further data needed to run the analysis scripts provided [here](https://github.com/Mycology-Microbiology-Center/Fungal_Endemicity_and_Vulnerability/superecoregions_and_endemicity). The entire folder is to be copied in the working directory to run the pipeline.
  3. maps_otu_numbers_and_se_characteristics - vector maps of the superecoregions and the number of OTUs and endemic OTUs per region for different functional groups
  4. maps_traits_endemism - vector maps of endemicity indices per region f different functional groups
  5. 01_super_Ecoregions_numbers.pdf - vector map of the superecoregions used in the study numbered from 1 - 174.
  6. legend_01_super_ecoregions_numbers.csv - legend with superecoregion names for 01_super_Ecoregions_numbers.pdf.
  7. super_eoregions_results - Superecoregions with number of OTUs, number of endemic OTUs and endemicity indices in R data format, for further analyses and visualization
  8. super_ecoregions.shp - Superecoregions with number of OTUs, number of endemic OTUs and endemicity indices as shape file, for further analyses and visualization

 

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01_super_ecoregions_numbers.pdf

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Additional details

Related works

Cites
Dataset: 10.5281/zenodo.6983158 (DOI)
Is published in
Journal article: 10.1111/gcb.16398 (DOI)