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immunomind/immunarch: Immunarch 0.7.0

Aleksandr Popov

New function repSomaticHypermutation() to calculate number of mutations against the germline for each clonotype Visualization for repGermline() beta: for now, specific clonotypes can be highlighted on the tree only by manually changing values in Type column All repGermline() options are now starting with . point repGermline(): .ref_only_first argument removed, because alleles are already unique for each species New repGermline() option .align_j_gene for more precise (but slower) germline calculation Updated tutorials Various updates for texts and documentation Various bugfixes in BCR pipeline

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Publication date:
August 11, 2022
DOI:
10.5281/zenodo.6984421

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10.5281/zenodo.6984421

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Version 0.7.0 10.5281/zenodo.6984421 Aug 11, 2022
Version 0.6.9 10.5281/zenodo.6599744 May 31, 2022
Version 0.6.8 10.5281/zenodo.6524612 May 6, 2022
Version 0.6.5 10.5281/zenodo.3893991 Jun 15, 2020
Version 0.6.4 10.5281/zenodo.3826503 May 14, 2020
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