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immunomind/immunarch: Immunarch 0.7.0

Aleksandr Popov

New function repSomaticHypermutation() to calculate number of mutations against the germline for each clonotype Visualization for repGermline() beta: for now, specific clonotypes can be highlighted on the tree only by manually changing values in Type column All repGermline() options are now starting with . point repGermline(): .ref_only_first argument removed, because alleles are already unique for each species New repGermline() option .align_j_gene for more precise (but slower) germline calculation Updated tutorials Various updates for texts and documentation Various bugfixes in BCR pipeline

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