Published July 4, 2022 | Version v1
Poster Open

Marker imputation and linkage map construction using a skim sequenced diploid potato population

Creators

  • 1. Plant Breeding, Wageningen University and Research
  • 2. Plant Breeding, Wageningen University and ResearchWageningen Univeristy
  • 3. GenNovation, Plant Breeding, Wageningen University and Research

Description

The pipeline described in this poster facilitates the imputation of genotyping data from skim sequenced full-sib diploid populations.
The resulting imputed markers can be used to construct high density linkage maps, explore transmission ratio distortion and identify loci
regulating important traits.

Files

EAPR_poster_imputation_linkage_map.pdf

Files (1.9 MB)

Name Size Download all
md5:97ced48ddd4691bf825655b3e6abb092
1.9 MB Preview Download

Additional details

References

  • Chen, M., Fan, W., Ji, F., Hua, H., Liu, J., Yan, M., Ma, Q., Fan, J., Wang, Q., Zhang, S. and Liu, G., 2021. Genome-wide identification of agronomically important genes in outcrossing crops using OutcrossSeq. Molecular plant, 14(4), pp.556-570.
  • Tang, D., Jia, Y., Zhang, J., Li, H., Cheng, L., Wang, P., Bao, Z., Liu, Z., Feng, S., Zhu, X. and Li, D., 2022. Genome evolution and diversity of wild and cultivated potatoes. Nature, pp.1-7.
  • Zhang, C., Wang, P., Tang, D., Yang, Z., Lu, F., Qi, J., Tawari, N.R., Shang, Y., Li, C. and Huang, S., 2019. The genetic basis of inbreeding depression in potato. Nature Genetics, 51(3), pp.374-378.