Published August 2, 2022
| Version v0.0.1
Software
Open
chfi/gfaestus: a pangenome graph browser
Description
gfaestus
is a pangenome graph browser for GFA files. It reads graphs in GFAv1 format, with 2D layouts produced by odgi
. The user can interact with the graph nodes, to view the set of paths at each node, or provide overlays which color the nodes based on path depth or sequence features. gfaestus
can scale to simultaneously display all the nodes in a whole human pan-chromosome. To link biological features to the graph model, gfaestus
uses colors and labels to display path-relative annotations provided in BED format.
Files
chfi/gfaestus-v0.0.1.zip
Files
(336.4 kB)
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md5:390b87e6f149331800fe4eff3b4f1ea0
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Additional details
Related works
- Is supplement to
- https://github.com/chfi/gfaestus/tree/v0.0.1 (URL)